JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:43 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1uz3a_.name2015-04-17 19:12 0 Job name flag file
[ ]jp_pmqedKK.align2015-04-17 21:43 19KPSIBLAST alignment in FASTA format
[TXT]jp_pmqedKK.als2015-04-17 21:43 2.0KAlscript command file for PS/PDF output
[ ]jp_pmqedKK.blast.gz2015-04-17 21:43 72KCompressed PSIBLAST output file
[TXT]jp_pmqedKK.coils.csv2015-04-17 21:43 642 COILS output in CSV format
[ ]jp_pmqedKK.coilseq.lupas_142015-04-17 21:43 4.3KCOILS output, window length 14
[ ]jp_pmqedKK.coilseq.lupas_212015-04-17 21:43 4.3KCOILS output, window length 21
[ ]jp_pmqedKK.coilseq.lupas_282015-04-17 21:43 4.3KCOILS output, window length 28
[ ]jp_pmqedKK.concise2015-04-17 21:43 40KPrediction: coiled-coil, solvent, alignment
[ ]jp_pmqedKK.concise.blc2015-04-17 21:43 20KBLC format prediction and alignment data
[ ]jp_pmqedKK.concise.fasta2015-04-17 21:43 20KPrediction: coiled-coil, solvent, alignment
[ ]jp_pmqedKK.concise.pdf2015-04-17 21:43 116KPDF prediction and alignment data
[ ]jp_pmqedKK.concise.ps2015-04-17 21:43 2.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_pmqedKK.fasta2015-04-17 21:37 116 Input query sequence in FASTA format
[ ]jp_pmqedKK.full_MSA.fasta2015-04-17 21:43 105KFull MSA before JPred filters in FASTA
[TXT]jp_pmqedKK.full_MSA.fasta.noGaps.html2015-04-17 21:43 99KFull MSA before JPred filters in FASTA
[TXT]jp_pmqedKK.full_MSA.fasta.withGaps.html2015-04-17 21:43 431KFull MSA before JPred filters in FASTA
[ ]jp_pmqedKK.hmm2015-04-17 21:43 19KHHMer2 profile of the alignment
[TXT]jp_pmqedKK.html2015-04-17 21:43 62KHTML prediction and alignment data
[ ]jp_pmqedKK.input2015-04-17 19:12 109 Raw input data for analysis
[ ]jp_pmqedKK.jalview2015-04-17 21:43 2.9KJalview annotation file for alignment
[ ]jp_pmqedKK.jnet2015-04-17 21:43 3.8KJnet secondary structure output
[TXT]jp_pmqedKK.profile2015-04-17 21:41 17KPSIBLAST profile from alignment
[ ]jp_pmqedKK.pssm2015-04-17 21:43 22KPSIBLAST PSSM for Jnet
[TXT]jp_pmqedKK.results.html2016-02-15 12:18 51KJPred results page
[TXT]jp_pmqedKK.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_pmqedKK.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_pmqedKK.seq2015-04-17 19:12 116 Sequence data file
[TXT]jp_pmqedKK.simple.html2015-04-17 21:43 1.2KBrief HTML: sequence and prediction only
[TXT]jp_pmqedKK.svg.html2015-04-17 21:43 43KJalview SVG summary of results
[ ]jp_pmqedKK.tar.gz2015-04-17 21:43 272KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.