JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:36 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1v74b_.name2015-04-17 17:59 0 Job name flag file
[ ]jp_3FGPV42.align2015-04-17 19:36 5.2KPSIBLAST alignment in FASTA format
[TXT]jp_3FGPV42.als2015-04-17 19:36 1.7KAlscript command file for PS/PDF output
[ ]jp_3FGPV42.blast.gz2015-04-17 19:36 9.8KCompressed PSIBLAST output file
[TXT]jp_3FGPV42.coils.csv2015-04-17 19:36 552 COILS output in CSV format
[ ]jp_3FGPV42.coilseq.lupas_142015-04-17 19:36 3.7KCOILS output, window length 14
[ ]jp_3FGPV42.coilseq.lupas_212015-04-17 19:36 3.7KCOILS output, window length 21
[ ]jp_3FGPV42.coilseq.lupas_282015-04-17 19:36 3.7KCOILS output, window length 28
[ ]jp_3FGPV42.concise2015-04-17 19:36 14KPrediction: coiled-coil, solvent, alignment
[ ]jp_3FGPV42.concise.blc2015-04-17 19:36 6.5KBLC format prediction and alignment data
[ ]jp_3FGPV42.concise.fasta2015-04-17 19:36 6.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_3FGPV42.concise.pdf2015-04-17 19:36 42KPDF prediction and alignment data
[ ]jp_3FGPV42.concise.ps2015-04-17 19:36 741KPrediction: coiled-coil, solvent, alignment
[ ]jp_3FGPV42.fasta2015-04-17 19:33 101 Input query sequence in FASTA format
[ ]jp_3FGPV42.full_MSA.fasta2015-04-17 19:36 9.1KFull MSA before JPred filters in FASTA
[TXT]jp_3FGPV42.full_MSA.fasta.noGaps.html2015-04-17 19:36 12KFull MSA before JPred filters in FASTA
[TXT]jp_3FGPV42.full_MSA.fasta.withGaps.html2015-04-17 19:36 47KFull MSA before JPred filters in FASTA
[ ]jp_3FGPV42.hmm2015-04-17 19:36 16KHHMer2 profile of the alignment
[TXT]jp_3FGPV42.html2015-04-17 19:36 25KHTML prediction and alignment data
[ ]jp_3FGPV42.input2015-04-17 17:59 94 Raw input data for analysis
[ ]jp_3FGPV42.jalview2015-04-17 19:36 2.6KJalview annotation file for alignment
[ ]jp_3FGPV42.jnet2015-04-17 19:36 3.3KJnet secondary structure output
[TXT]jp_3FGPV42.profile2015-04-17 19:35 14KPSIBLAST profile from alignment
[ ]jp_3FGPV42.pssm2015-04-17 19:36 19KPSIBLAST PSSM for Jnet
[TXT]jp_3FGPV42.results.html2016-02-15 12:18 44KJPred results page
[TXT]jp_3FGPV42.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_3FGPV42.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_3FGPV42.seq2015-04-17 17:59 101 Sequence data file
[TXT]jp_3FGPV42.simple.html2015-04-17 19:36 1.1KBrief HTML: sequence and prediction only
[TXT]jp_3FGPV42.svg.html2015-04-17 19:36 36KJalview SVG summary of results
[ ]jp_3FGPV42.tar.gz2015-04-17 19:36 92KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.