JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:56 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vcta1.name2015-04-17 16:55 0 Job name flag file
[ ]jp_n1k4ehw.align2015-04-17 17:56 70KPSIBLAST alignment in FASTA format
[TXT]jp_n1k4ehw.als2015-04-17 17:56 1.7KAlscript command file for PS/PDF output
[ ]jp_n1k4ehw.blast.gz2015-04-17 17:56 107KCompressed PSIBLAST output file
[TXT]jp_n1k4ehw.coils.csv2015-04-17 17:56 624 COILS output in CSV format
[ ]jp_n1k4ehw.coilseq.lupas_142015-04-17 17:56 4.2KCOILS output, window length 14
[ ]jp_n1k4ehw.coilseq.lupas_212015-04-17 17:56 4.2KCOILS output, window length 21
[ ]jp_n1k4ehw.coilseq.lupas_282015-04-17 17:56 4.2KCOILS output, window length 28
[ ]jp_n1k4ehw.concise2015-04-17 17:56 136KPrediction: coiled-coil, solvent, alignment
[ ]jp_n1k4ehw.concise.blc2015-04-17 17:56 70KBLC format prediction and alignment data
[ ]jp_n1k4ehw.concise.fasta2015-04-17 17:56 71KPrediction: coiled-coil, solvent, alignment
[ ]jp_n1k4ehw.concise.pdf2015-04-17 17:56 450KPDF prediction and alignment data
[ ]jp_n1k4ehw.concise.ps2015-04-17 17:56 8.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_n1k4ehw.fasta2015-04-17 17:52 113 Input query sequence in FASTA format
[ ]jp_n1k4ehw.full_MSA.fasta2015-04-17 17:56 238KFull MSA before JPred filters in FASTA
[TXT]jp_n1k4ehw.full_MSA.fasta.noGaps.html2015-04-17 17:56 183KFull MSA before JPred filters in FASTA
[TXT]jp_n1k4ehw.full_MSA.fasta.withGaps.html2015-04-17 17:56 1.3MFull MSA before JPred filters in FASTA
[ ]jp_n1k4ehw.hmm2015-04-17 17:56 19KHHMer2 profile of the alignment
[TXT]jp_n1k4ehw.html2015-04-17 17:56 198KHTML prediction and alignment data
[ ]jp_n1k4ehw.input2015-04-17 16:55 106 Raw input data for analysis
[ ]jp_n1k4ehw.jalview2015-04-17 17:56 2.9KJalview annotation file for alignment
[ ]jp_n1k4ehw.jnet2015-04-17 17:56 3.7KJnet secondary structure output
[TXT]jp_n1k4ehw.profile2015-04-17 17:54 16KPSIBLAST profile from alignment
[ ]jp_n1k4ehw.pssm2015-04-17 17:56 21KPSIBLAST PSSM for Jnet
[TXT]jp_n1k4ehw.results.html2016-02-15 12:18 48KJPred results page
[TXT]jp_n1k4ehw.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_n1k4ehw.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_n1k4ehw.seq2015-04-17 16:55 113 Sequence data file
[TXT]jp_n1k4ehw.simple.html2015-04-17 17:56 1.1KBrief HTML: sequence and prediction only
[TXT]jp_n1k4ehw.svg.html2015-04-17 17:56 40KJalview SVG summary of results
[ ]jp_n1k4ehw.tar.gz2015-04-17 17:56 809KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.