JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:48 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1w6sa_.name2015-04-17 16:45 0 Job name flag file
[ ]jp_M4MChI4.align2015-04-17 17:46 239KPSIBLAST alignment in FASTA format
[TXT]jp_M4MChI4.als2015-04-17 17:46 6.4KAlscript command file for PS/PDF output
[ ]jp_M4MChI4.blast.gz2015-04-17 17:43 21MCompressed PSIBLAST output file
[TXT]jp_M4MChI4.coils.csv2015-04-17 17:46 3.5KCOILS output in CSV format
[ ]jp_M4MChI4.coilseq.lupas_142015-04-17 17:46 25KCOILS output, window length 14
[ ]jp_M4MChI4.coilseq.lupas_212015-04-17 17:46 25KCOILS output, window length 21
[ ]jp_M4MChI4.coilseq.lupas_282015-04-17 17:46 25KCOILS output, window length 28
[ ]jp_M4MChI4.concise2015-04-17 17:46 492KPrediction: coiled-coil, solvent, alignment
[ ]jp_M4MChI4.concise.blc2015-04-17 17:46 244KBLC format prediction and alignment data
[ ]jp_M4MChI4.concise.fasta2015-04-17 17:46 245KPrediction: coiled-coil, solvent, alignment
[ ]jp_M4MChI4.concise.pdf2015-04-17 17:46 1.6MPDF prediction and alignment data
[ ]jp_M4MChI4.concise.ps2015-04-17 17:46 30MPrediction: coiled-coil, solvent, alignment
[ ]jp_M4MChI4.fasta2015-04-17 17:33 616 Input query sequence in FASTA format
[ ]jp_M4MChI4.full_MSA.fasta2015-04-17 17:45 52MFull MSA before JPred filters in FASTA
[TXT]jp_M4MChI4.full_MSA.fasta.noGaps.html2015-04-17 17:48 3.6MFull MSA before JPred filters in FASTA
[TXT]jp_M4MChI4.full_MSA.fasta.withGaps.html2015-04-17 17:48 122MFull MSA before JPred filters in FASTA
[ ]jp_M4MChI4.hmm2015-04-17 17:46 112KHHMer2 profile of the alignment
[TXT]jp_M4MChI4.html2015-04-17 17:46 355KHTML prediction and alignment data
[ ]jp_M4MChI4.input2015-04-17 16:45 602 Raw input data for analysis
[ ]jp_M4MChI4.jalview2015-04-17 17:46 12KJalview annotation file for alignment
[ ]jp_M4MChI4.jnet2015-04-17 17:46 22KJnet secondary structure output
[TXT]jp_M4MChI4.profile2015-04-17 17:39 95KPSIBLAST profile from alignment
[ ]jp_M4MChI4.pssm2015-04-17 17:46 128KPSIBLAST PSSM for Jnet
[TXT]jp_M4MChI4.results.html2016-02-15 12:19 235KJPred results page
[TXT]jp_M4MChI4.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_M4MChI4.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_M4MChI4.seq2015-04-17 16:45 616 Sequence data file
[TXT]jp_M4MChI4.simple.html2015-04-17 17:46 2.9KBrief HTML: sequence and prediction only
[TXT]jp_M4MChI4.svg.html2015-04-17 17:48 227KJalview SVG summary of results
[ ]jp_M4MChI4.tar.gz2015-04-17 17:48 32MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.