JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:45 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1xlya_.name2015-04-17 15:34 0 Job name flag file
[ ]jp__64ES4C.align2015-04-17 15:45 4.3KPSIBLAST alignment in FASTA format
[TXT]jp__64ES4C.als2015-04-17 15:45 3.1KAlscript command file for PS/PDF output
[ ]jp__64ES4C.blast.gz2015-04-17 15:45 7.4KCompressed PSIBLAST output file
[TXT]jp__64ES4C.coils.csv2015-04-17 15:45 1.3KCOILS output in CSV format
[ ]jp__64ES4C.coilseq.lupas_142015-04-17 15:45 9.4KCOILS output, window length 14
[ ]jp__64ES4C.coilseq.lupas_212015-04-17 15:45 9.4KCOILS output, window length 21
[ ]jp__64ES4C.coilseq.lupas_282015-04-17 15:45 9.4KCOILS output, window length 28
[ ]jp__64ES4C.concise2015-04-17 15:45 18KPrediction: coiled-coil, solvent, alignment
[ ]jp__64ES4C.concise.blc2015-04-17 15:45 7.6KBLC format prediction and alignment data
[ ]jp__64ES4C.concise.fasta2015-04-17 15:45 6.6KPrediction: coiled-coil, solvent, alignment
[ ]jp__64ES4C.concise.pdf2015-04-17 15:45 56KPDF prediction and alignment data
[ ]jp__64ES4C.concise.ps2015-04-17 15:45 964KPrediction: coiled-coil, solvent, alignment
[ ]jp__64ES4C.fasta2015-04-17 15:42 240 Input query sequence in FASTA format
[ ]jp__64ES4C.full_MSA.fasta2015-04-17 15:45 7.1KFull MSA before JPred filters in FASTA
[TXT]jp__64ES4C.full_MSA.fasta.noGaps.html2015-04-17 15:45 8.0KFull MSA before JPred filters in FASTA
[TXT]jp__64ES4C.full_MSA.fasta.withGaps.html2015-04-17 15:45 15KFull MSA before JPred filters in FASTA
[ ]jp__64ES4C.hmm2015-04-17 15:45 42KHHMer2 profile of the alignment
[TXT]jp__64ES4C.html2015-04-17 15:45 33KHTML prediction and alignment data
[ ]jp__64ES4C.input2015-04-17 15:34 231 Raw input data for analysis
[ ]jp__64ES4C.jalview2015-04-17 15:45 5.5KJalview annotation file for alignment
[ ]jp__64ES4C.jnet2015-04-17 15:45 8.2KJnet secondary structure output
[TXT]jp__64ES4C.profile2015-04-17 15:43 36KPSIBLAST profile from alignment
[ ]jp__64ES4C.pssm2015-04-17 15:45 48KPSIBLAST PSSM for Jnet
[TXT]jp__64ES4C.results.html2016-02-15 12:19 99KJPred results page
[TXT]jp__64ES4C.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp__64ES4C.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp__64ES4C.seq2015-04-17 15:34 240 Sequence data file
[TXT]jp__64ES4C.simple.html2015-04-17 15:45 1.6KBrief HTML: sequence and prediction only
[TXT]jp__64ES4C.svg.html2015-04-17 15:45 91KJalview SVG summary of results
[ ]jp__64ES4C.tar.gz2015-04-17 15:45 119KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.