JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:39 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1z3eb1.name2015-04-17 17:25 0 Job name flag file
[ ]jp_7dJjFet.align2015-04-17 18:38 40KPSIBLAST alignment in FASTA format
[TXT]jp_7dJjFet.als2015-04-17 18:38 1.8KAlscript command file for PS/PDF output
[ ]jp_7dJjFet.blast.gz2015-04-17 18:38 358KCompressed PSIBLAST output file
[TXT]jp_7dJjFet.coils.csv2015-04-17 18:38 432 COILS output in CSV format
[ ]jp_7dJjFet.coilseq.lupas_142015-04-17 18:38 2.8KCOILS output, window length 14
[ ]jp_7dJjFet.coilseq.lupas_212015-04-17 18:38 2.8KCOILS output, window length 21
[ ]jp_7dJjFet.coilseq.lupas_282015-04-17 18:38 2.8KCOILS output, window length 28
[ ]jp_7dJjFet.concise2015-04-17 18:38 79KPrediction: coiled-coil, solvent, alignment
[ ]jp_7dJjFet.concise.blc2015-04-17 18:38 41KBLC format prediction and alignment data
[ ]jp_7dJjFet.concise.fasta2015-04-17 18:38 41KPrediction: coiled-coil, solvent, alignment
[ ]jp_7dJjFet.concise.pdf2015-04-17 18:38 255KPDF prediction and alignment data
[ ]jp_7dJjFet.concise.ps2015-04-17 18:38 4.4MPrediction: coiled-coil, solvent, alignment
[ ]jp_7dJjFet.fasta2015-04-17 18:34 80 Input query sequence in FASTA format
[ ]jp_7dJjFet.full_MSA.fasta2015-04-17 18:38 465KFull MSA before JPred filters in FASTA
[TXT]jp_7dJjFet.full_MSA.fasta.noGaps.html2015-04-17 18:39 477KFull MSA before JPred filters in FASTA
[TXT]jp_7dJjFet.full_MSA.fasta.withGaps.html2015-04-17 18:39 2.8MFull MSA before JPred filters in FASTA
[ ]jp_7dJjFet.hmm2015-04-17 18:38 13KHHMer2 profile of the alignment
[TXT]jp_7dJjFet.html2015-04-17 18:38 141KHTML prediction and alignment data
[ ]jp_7dJjFet.input2015-04-17 17:25 74 Raw input data for analysis
[ ]jp_7dJjFet.jalview2015-04-17 18:38 2.2KJalview annotation file for alignment
[ ]jp_7dJjFet.jnet2015-04-17 18:38 2.5KJnet secondary structure output
[TXT]jp_7dJjFet.profile2015-04-17 18:36 11KPSIBLAST profile from alignment
[ ]jp_7dJjFet.pssm2015-04-17 18:38 14KPSIBLAST PSSM for Jnet
[TXT]jp_7dJjFet.results.html2016-02-15 12:19 37KJPred results page
[TXT]jp_7dJjFet.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_7dJjFet.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_7dJjFet.seq2015-04-17 17:25 80 Sequence data file
[TXT]jp_7dJjFet.simple.html2015-04-17 18:38 1.1KBrief HTML: sequence and prediction only
[TXT]jp_7dJjFet.svg.html2015-04-17 18:39 29KJalview SVG summary of results
[ ]jp_7dJjFet.tar.gz2015-04-17 18:39 948KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.