JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:43 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2a1va1.name2015-04-17 17:26 0 Job name flag file
[ ]jp_Lggewlk.align2015-04-17 18:43 142KPSIBLAST alignment in FASTA format
[TXT]jp_Lggewlk.als2015-04-17 18:43 2.7KAlscript command file for PS/PDF output
[ ]jp_Lggewlk.blast.gz2015-04-17 18:42 1.0MCompressed PSIBLAST output file
[TXT]jp_Lggewlk.coils.csv2015-04-17 18:43 816 COILS output in CSV format
[ ]jp_Lggewlk.coilseq.lupas_142015-04-17 18:43 5.5KCOILS output, window length 14
[ ]jp_Lggewlk.coilseq.lupas_212015-04-17 18:43 5.5KCOILS output, window length 21
[ ]jp_Lggewlk.coilseq.lupas_282015-04-17 18:43 5.5KCOILS output, window length 28
[ ]jp_Lggewlk.concise2015-04-17 18:43 277KPrediction: coiled-coil, solvent, alignment
[ ]jp_Lggewlk.concise.blc2015-04-17 18:43 142KBLC format prediction and alignment data
[ ]jp_Lggewlk.concise.fasta2015-04-17 18:43 143KPrediction: coiled-coil, solvent, alignment
[ ]jp_Lggewlk.concise.pdf2015-04-17 18:43 931KPDF prediction and alignment data
[ ]jp_Lggewlk.concise.ps2015-04-17 18:43 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_Lggewlk.fasta2015-04-17 18:36 145 Input query sequence in FASTA format
[ ]jp_Lggewlk.full_MSA.fasta2015-04-17 18:43 2.0MFull MSA before JPred filters in FASTA
[TXT]jp_Lggewlk.full_MSA.fasta.noGaps.html2015-04-17 18:43 630KFull MSA before JPred filters in FASTA
[TXT]jp_Lggewlk.full_MSA.fasta.withGaps.html2015-04-17 18:43 8.5MFull MSA before JPred filters in FASTA
[ ]jp_Lggewlk.hmm2015-04-17 18:43 25KHHMer2 profile of the alignment
[TXT]jp_Lggewlk.html2015-04-17 18:43 339KHTML prediction and alignment data
[ ]jp_Lggewlk.input2015-04-17 17:26 138 Raw input data for analysis
[ ]jp_Lggewlk.jalview2015-04-17 18:43 3.5KJalview annotation file for alignment
[ ]jp_Lggewlk.jnet2015-04-17 18:43 4.8KJnet secondary structure output
[TXT]jp_Lggewlk.profile2015-04-17 18:40 21KPSIBLAST profile from alignment
[ ]jp_Lggewlk.pssm2015-04-17 18:43 28KPSIBLAST PSSM for Jnet
[TXT]jp_Lggewlk.results.html2016-02-15 12:19 63KJPred results page
[TXT]jp_Lggewlk.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_Lggewlk.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_Lggewlk.seq2015-04-17 17:26 145 Sequence data file
[TXT]jp_Lggewlk.simple.html2015-04-17 18:43 1.4KBrief HTML: sequence and prediction only
[TXT]jp_Lggewlk.svg.html2015-04-17 18:43 55KJalview SVG summary of results
[ ]jp_Lggewlk.tar.gz2015-04-17 18:43 3.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.