JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:48 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2brfa1.name2015-04-17 17:27 0 Job name flag file
[ ]jp_aI5VDEM.align2015-04-17 18:48 39KPSIBLAST alignment in FASTA format
[TXT]jp_aI5VDEM.als2015-04-17 18:48 2.6KAlscript command file for PS/PDF output
[ ]jp_aI5VDEM.blast.gz2015-04-17 18:47 152KCompressed PSIBLAST output file
[TXT]jp_aI5VDEM.coils.csv2015-04-17 18:48 630 COILS output in CSV format
[ ]jp_aI5VDEM.coilseq.lupas_142015-04-17 18:48 4.2KCOILS output, window length 14
[ ]jp_aI5VDEM.coilseq.lupas_212015-04-17 18:48 4.2KCOILS output, window length 21
[ ]jp_aI5VDEM.coilseq.lupas_282015-04-17 18:48 4.2KCOILS output, window length 28
[ ]jp_aI5VDEM.concise2015-04-17 18:48 77KPrediction: coiled-coil, solvent, alignment
[ ]jp_aI5VDEM.concise.blc2015-04-17 18:48 39KBLC format prediction and alignment data
[ ]jp_aI5VDEM.concise.fasta2015-04-17 18:48 40KPrediction: coiled-coil, solvent, alignment
[ ]jp_aI5VDEM.concise.pdf2015-04-17 18:48 256KPDF prediction and alignment data
[ ]jp_aI5VDEM.concise.ps2015-04-17 18:48 4.4MPrediction: coiled-coil, solvent, alignment
[ ]jp_aI5VDEM.fasta2015-04-17 18:39 114 Input query sequence in FASTA format
[ ]jp_aI5VDEM.full_MSA.fasta2015-04-17 18:48 422KFull MSA before JPred filters in FASTA
[TXT]jp_aI5VDEM.full_MSA.fasta.noGaps.html2015-04-17 18:48 155KFull MSA before JPred filters in FASTA
[TXT]jp_aI5VDEM.full_MSA.fasta.withGaps.html2015-04-17 18:48 1.8MFull MSA before JPred filters in FASTA
[ ]jp_aI5VDEM.hmm2015-04-17 18:48 19KHHMer2 profile of the alignment
[TXT]jp_aI5VDEM.html2015-04-17 18:48 111KHTML prediction and alignment data
[ ]jp_aI5VDEM.input2015-04-17 17:27 107 Raw input data for analysis
[ ]jp_aI5VDEM.jalview2015-04-17 18:48 2.8KJalview annotation file for alignment
[ ]jp_aI5VDEM.jnet2015-04-17 18:48 3.7KJnet secondary structure output
[TXT]jp_aI5VDEM.profile2015-04-17 18:44 16KPSIBLAST profile from alignment
[ ]jp_aI5VDEM.pssm2015-04-17 18:48 21KPSIBLAST PSSM for Jnet
[TXT]jp_aI5VDEM.results.html2016-02-15 12:19 50KJPred results page
[TXT]jp_aI5VDEM.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_aI5VDEM.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_aI5VDEM.seq2015-04-17 17:27 114 Sequence data file
[TXT]jp_aI5VDEM.simple.html2015-04-17 18:48 1.3KBrief HTML: sequence and prediction only
[TXT]jp_aI5VDEM.svg.html2015-04-17 18:48 42KJalview SVG summary of results
[ ]jp_aI5VDEM.tar.gz2015-04-17 18:48 638KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.