JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:53 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2cx1a2.name2015-04-17 15:36 0 Job name flag file
[ ]jp_qZdsM6h.align2015-04-17 15:53 158KPSIBLAST alignment in FASTA format
[TXT]jp_qZdsM6h.als2015-04-17 15:53 3.3KAlscript command file for PS/PDF output
[ ]jp_qZdsM6h.blast.gz2015-04-17 15:52 2.2MCompressed PSIBLAST output file
[TXT]jp_qZdsM6h.coils.csv2015-04-17 15:53 1.1KCOILS output in CSV format
[ ]jp_qZdsM6h.coilseq.lupas_142015-04-17 15:53 7.7KCOILS output, window length 14
[ ]jp_qZdsM6h.coilseq.lupas_212015-04-17 15:53 7.7KCOILS output, window length 21
[ ]jp_qZdsM6h.coilseq.lupas_282015-04-17 15:53 7.7KCOILS output, window length 28
[ ]jp_qZdsM6h.concise2015-04-17 15:53 313KPrediction: coiled-coil, solvent, alignment
[ ]jp_qZdsM6h.concise.blc2015-04-17 15:53 159KBLC format prediction and alignment data
[ ]jp_qZdsM6h.concise.fasta2015-04-17 15:53 160KPrediction: coiled-coil, solvent, alignment
[ ]jp_qZdsM6h.concise.pdf2015-04-17 15:53 1.0MPDF prediction and alignment data
[ ]jp_qZdsM6h.concise.ps2015-04-17 15:53 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_qZdsM6h.fasta2015-04-17 15:46 199 Input query sequence in FASTA format
[ ]jp_qZdsM6h.full_MSA.fasta2015-04-17 15:52 6.5MFull MSA before JPred filters in FASTA
[TXT]jp_qZdsM6h.full_MSA.fasta.noGaps.html2015-04-17 15:53 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_qZdsM6h.full_MSA.fasta.withGaps.html2015-04-17 15:53 19MFull MSA before JPred filters in FASTA
[ ]jp_qZdsM6h.hmm2015-04-17 15:53 35KHHMer2 profile of the alignment
[TXT]jp_qZdsM6h.html2015-04-17 15:53 327KHTML prediction and alignment data
[ ]jp_qZdsM6h.input2015-04-17 15:36 191 Raw input data for analysis
[ ]jp_qZdsM6h.jalview2015-04-17 15:53 4.5KJalview annotation file for alignment
[ ]jp_qZdsM6h.jnet2015-04-17 15:53 6.8KJnet secondary structure output
[TXT]jp_qZdsM6h.profile2015-04-17 15:51 30KPSIBLAST profile from alignment
[ ]jp_qZdsM6h.pssm2015-04-17 15:53 40KPSIBLAST PSSM for Jnet
[TXT]jp_qZdsM6h.results.html2016-02-15 12:19 84KJPred results page
[TXT]jp_qZdsM6h.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_qZdsM6h.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_qZdsM6h.seq2015-04-17 15:36 199 Sequence data file
[TXT]jp_qZdsM6h.simple.html2015-04-17 15:53 1.6KBrief HTML: sequence and prediction only
[TXT]jp_qZdsM6h.svg.html2015-04-17 15:53 76KJalview SVG summary of results
[ ]jp_qZdsM6h.tar.gz2015-04-17 15:53 5.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.