JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:49 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2dt8a_.name2015-04-17 18:05 0 Job name flag file
[ ]jp_GT5mDtj.align2015-04-17 19:48 270KPSIBLAST alignment in FASTA format
[TXT]jp_GT5mDtj.als2015-04-17 19:48 4.6KAlscript command file for PS/PDF output
[ ]jp_GT5mDtj.blast.gz2015-04-17 19:47 5.3MCompressed PSIBLAST output file
[TXT]jp_GT5mDtj.coils.csv2015-04-17 19:48 1.7KCOILS output in CSV format
[ ]jp_GT5mDtj.coilseq.lupas_142015-04-17 19:48 12KCOILS output, window length 14
[ ]jp_GT5mDtj.coilseq.lupas_212015-04-17 19:48 12KCOILS output, window length 21
[ ]jp_GT5mDtj.coilseq.lupas_282015-04-17 19:48 12KCOILS output, window length 28
[ ]jp_GT5mDtj.concise2015-04-17 19:48 536KPrediction: coiled-coil, solvent, alignment
[ ]jp_GT5mDtj.concise.blc2015-04-17 19:48 270KBLC format prediction and alignment data
[ ]jp_GT5mDtj.concise.fasta2015-04-17 19:48 273KPrediction: coiled-coil, solvent, alignment
[ ]jp_GT5mDtj.concise.pdf2015-04-17 19:49 2.0MPDF prediction and alignment data
[ ]jp_GT5mDtj.concise.ps2015-04-17 19:48 35MPrediction: coiled-coil, solvent, alignment
[ ]jp_GT5mDtj.fasta2015-04-17 19:43 296 Input query sequence in FASTA format
[ ]jp_GT5mDtj.full_MSA.fasta2015-04-17 19:48 7.5MFull MSA before JPred filters in FASTA
[TXT]jp_GT5mDtj.full_MSA.fasta.noGaps.html2015-04-17 19:49 1.7MFull MSA before JPred filters in FASTA
[TXT]jp_GT5mDtj.full_MSA.fasta.withGaps.html2015-04-17 19:49 33MFull MSA before JPred filters in FASTA
[ ]jp_GT5mDtj.hmm2015-04-17 19:48 53KHHMer2 profile of the alignment
[TXT]jp_GT5mDtj.html2015-04-17 19:48 474KHTML prediction and alignment data
[ ]jp_GT5mDtj.input2015-04-17 18:05 287 Raw input data for analysis
[ ]jp_GT5mDtj.jalview2015-04-17 19:48 6.5KJalview annotation file for alignment
[ ]jp_GT5mDtj.jnet2015-04-17 19:48 10KJnet secondary structure output
[TXT]jp_GT5mDtj.profile2015-04-17 19:46 45KPSIBLAST profile from alignment
[ ]jp_GT5mDtj.pssm2015-04-17 19:48 60KPSIBLAST PSSM for Jnet
[TXT]jp_GT5mDtj.results.html2016-02-15 12:19 123KJPred results page
[TXT]jp_GT5mDtj.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_GT5mDtj.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_GT5mDtj.seq2015-04-17 18:05 296 Sequence data file
[TXT]jp_GT5mDtj.simple.html2015-04-17 19:48 2.0KBrief HTML: sequence and prediction only
[TXT]jp_GT5mDtj.svg.html2015-04-17 19:49 115KJalview SVG summary of results
[ ]jp_GT5mDtj.tar.gz2015-04-17 19:49 12MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.