JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:53 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2fsua1.name2015-04-17 19:20 0 Job name flag file
[ ]jp_lG1liOf.align2015-04-17 21:52 76KPSIBLAST alignment in FASTA format
[TXT]jp_lG1liOf.als2015-04-17 21:52 3.2KAlscript command file for PS/PDF output
[ ]jp_lG1liOf.blast.gz2015-04-17 21:52 387KCompressed PSIBLAST output file
[TXT]jp_lG1liOf.coils.csv2015-04-17 21:52 1.0KCOILS output in CSV format
[ ]jp_lG1liOf.coilseq.lupas_142015-04-17 21:52 7.1KCOILS output, window length 14
[ ]jp_lG1liOf.coilseq.lupas_212015-04-17 21:52 7.1KCOILS output, window length 21
[ ]jp_lG1liOf.coilseq.lupas_282015-04-17 21:52 7.1KCOILS output, window length 28
[ ]jp_lG1liOf.concise2015-04-17 21:52 153KPrediction: coiled-coil, solvent, alignment
[ ]jp_lG1liOf.concise.blc2015-04-17 21:52 77KBLC format prediction and alignment data
[ ]jp_lG1liOf.concise.fasta2015-04-17 21:52 78KPrediction: coiled-coil, solvent, alignment
[ ]jp_lG1liOf.concise.pdf2015-04-17 21:53 558KPDF prediction and alignment data
[ ]jp_lG1liOf.concise.ps2015-04-17 21:52 9.4MPrediction: coiled-coil, solvent, alignment
[ ]jp_lG1liOf.fasta2015-04-17 21:49 185 Input query sequence in FASTA format
[ ]jp_lG1liOf.full_MSA.fasta2015-04-17 21:52 526KFull MSA before JPred filters in FASTA
[TXT]jp_lG1liOf.full_MSA.fasta.noGaps.html2015-04-17 21:53 153KFull MSA before JPred filters in FASTA
[TXT]jp_lG1liOf.full_MSA.fasta.withGaps.html2015-04-17 21:53 1.8MFull MSA before JPred filters in FASTA
[ ]jp_lG1liOf.hmm2015-04-17 21:52 32KHHMer2 profile of the alignment
[TXT]jp_lG1liOf.html2015-04-17 21:52 170KHTML prediction and alignment data
[ ]jp_lG1liOf.input2015-04-17 19:20 177 Raw input data for analysis
[ ]jp_lG1liOf.jalview2015-04-17 21:52 4.2KJalview annotation file for alignment
[ ]jp_lG1liOf.jnet2015-04-17 21:52 6.3KJnet secondary structure output
[TXT]jp_lG1liOf.profile2015-04-17 21:51 27KPSIBLAST profile from alignment
[ ]jp_lG1liOf.pssm2015-04-17 21:52 37KPSIBLAST PSSM for Jnet
[TXT]jp_lG1liOf.results.html2016-02-15 12:19 78KJPred results page
[TXT]jp_lG1liOf.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_lG1liOf.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_lG1liOf.seq2015-04-17 19:20 185 Sequence data file
[TXT]jp_lG1liOf.simple.html2015-04-17 21:52 1.5KBrief HTML: sequence and prediction only
[TXT]jp_lG1liOf.svg.html2015-04-17 21:53 70KJalview SVG summary of results
[ ]jp_lG1liOf.tar.gz2015-04-17 21:53 1.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.