JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:21 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2hw4a1.name2015-04-17 16:20 0 Job name flag file
[ ]jp_53QwMhd.align2015-04-17 17:21 19KPSIBLAST alignment in FASTA format
[TXT]jp_53QwMhd.als2015-04-17 17:21 2.6KAlscript command file for PS/PDF output
[ ]jp_53QwMhd.blast.gz2015-04-17 17:21 80KCompressed PSIBLAST output file
[TXT]jp_53QwMhd.coils.csv2015-04-17 17:21 690 COILS output in CSV format
[ ]jp_53QwMhd.coilseq.lupas_142015-04-17 17:21 4.6KCOILS output, window length 14
[ ]jp_53QwMhd.coilseq.lupas_212015-04-17 17:21 4.6KCOILS output, window length 21
[ ]jp_53QwMhd.coilseq.lupas_282015-04-17 17:21 4.6KCOILS output, window length 28
[ ]jp_53QwMhd.concise2015-04-17 17:21 40KPrediction: coiled-coil, solvent, alignment
[ ]jp_53QwMhd.concise.blc2015-04-17 17:21 20KBLC format prediction and alignment data
[ ]jp_53QwMhd.concise.fasta2015-04-17 17:21 20KPrediction: coiled-coil, solvent, alignment
[ ]jp_53QwMhd.concise.pdf2015-04-17 17:21 125KPDF prediction and alignment data
[ ]jp_53QwMhd.concise.ps2015-04-17 17:21 2.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_53QwMhd.fasta2015-04-17 16:48 124 Input query sequence in FASTA format
[ ]jp_53QwMhd.full_MSA.fasta2015-04-17 17:21 97KFull MSA before JPred filters in FASTA
[TXT]jp_53QwMhd.full_MSA.fasta.noGaps.html2015-04-17 17:21 60KFull MSA before JPred filters in FASTA
[TXT]jp_53QwMhd.full_MSA.fasta.withGaps.html2015-04-17 17:21 411KFull MSA before JPred filters in FASTA
[ ]jp_53QwMhd.hmm2015-04-17 17:21 21KHHMer2 profile of the alignment
[TXT]jp_53QwMhd.html2015-04-17 17:21 59KHTML prediction and alignment data
[ ]jp_53QwMhd.input2015-04-17 16:20 117 Raw input data for analysis
[ ]jp_53QwMhd.jalview2015-04-17 17:21 3.0KJalview annotation file for alignment
[ ]jp_53QwMhd.jnet2015-04-17 17:21 4.1KJnet secondary structure output
[TXT]jp_53QwMhd.profile2015-04-17 17:20 18KPSIBLAST profile from alignment
[ ]jp_53QwMhd.pssm2015-04-17 17:21 24KPSIBLAST PSSM for Jnet
[TXT]jp_53QwMhd.results.html2016-02-15 12:20 54KJPred results page
[TXT]jp_53QwMhd.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_53QwMhd.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_53QwMhd.seq2015-04-17 16:20 124 Sequence data file
[TXT]jp_53QwMhd.simple.html2015-04-17 17:21 1.3KBrief HTML: sequence and prediction only
[TXT]jp_53QwMhd.svg.html2015-04-17 17:21 46KJalview SVG summary of results
[ ]jp_53QwMhd.tar.gz2015-04-17 17:21 305KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.