JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:33 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2i8da1.name2015-04-17 17:58 0 Job name flag file
[ ]jp_wrrH9_Y.align2015-04-17 19:33 129KPSIBLAST alignment in FASTA format
[TXT]jp_wrrH9_Y.als2015-04-17 19:33 2.5KAlscript command file for PS/PDF output
[ ]jp_wrrH9_Y.blast.gz2015-04-17 19:33 304KCompressed PSIBLAST output file
[TXT]jp_wrrH9_Y.coils.csv2015-04-17 19:33 756 COILS output in CSV format
[ ]jp_wrrH9_Y.coilseq.lupas_142015-04-17 19:33 5.1KCOILS output, window length 14
[ ]jp_wrrH9_Y.coilseq.lupas_212015-04-17 19:33 5.1KCOILS output, window length 21
[ ]jp_wrrH9_Y.coilseq.lupas_282015-04-17 19:33 5.1KCOILS output, window length 28
[ ]jp_wrrH9_Y.concise2015-04-17 19:33 251KPrediction: coiled-coil, solvent, alignment
[ ]jp_wrrH9_Y.concise.blc2015-04-17 19:33 129KBLC format prediction and alignment data
[ ]jp_wrrH9_Y.concise.fasta2015-04-17 19:33 131KPrediction: coiled-coil, solvent, alignment
[ ]jp_wrrH9_Y.concise.pdf2015-04-17 19:33 831KPDF prediction and alignment data
[ ]jp_wrrH9_Y.concise.ps2015-04-17 19:33 15MPrediction: coiled-coil, solvent, alignment
[ ]jp_wrrH9_Y.fasta2015-04-17 19:30 135 Input query sequence in FASTA format
[ ]jp_wrrH9_Y.full_MSA.fasta2015-04-17 19:33 839KFull MSA before JPred filters in FASTA
[TXT]jp_wrrH9_Y.full_MSA.fasta.noGaps.html2015-04-17 19:33 315KFull MSA before JPred filters in FASTA
[TXT]jp_wrrH9_Y.full_MSA.fasta.withGaps.html2015-04-17 19:33 3.8MFull MSA before JPred filters in FASTA
[ ]jp_wrrH9_Y.hmm2015-04-17 19:33 23KHHMer2 profile of the alignment
[TXT]jp_wrrH9_Y.html2015-04-17 19:33 321KHTML prediction and alignment data
[ ]jp_wrrH9_Y.input2015-04-17 17:58 128 Raw input data for analysis
[ ]jp_wrrH9_Y.jalview2015-04-17 19:33 3.3KJalview annotation file for alignment
[ ]jp_wrrH9_Y.jnet2015-04-17 19:33 4.5KJnet secondary structure output
[TXT]jp_wrrH9_Y.profile2015-04-17 19:32 20KPSIBLAST profile from alignment
[ ]jp_wrrH9_Y.pssm2015-04-17 19:33 26KPSIBLAST PSSM for Jnet
[TXT]jp_wrrH9_Y.results.html2016-02-15 12:20 59KJPred results page
[TXT]jp_wrrH9_Y.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_wrrH9_Y.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_wrrH9_Y.seq2015-04-17 17:58 135 Sequence data file
[TXT]jp_wrrH9_Y.simple.html2015-04-17 19:33 1.3KBrief HTML: sequence and prediction only
[TXT]jp_wrrH9_Y.svg.html2015-04-17 19:33 51KJalview SVG summary of results
[ ]jp_wrrH9_Y.tar.gz2015-04-17 19:33 1.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.