JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:51 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2lisa_.name2015-04-17 18:08 0 Job name flag file
[ ]jp_Shms8KY.align2015-04-17 19:51 3.1KPSIBLAST alignment in FASTA format
[TXT]jp_Shms8KY.als2015-04-17 19:51 2.2KAlscript command file for PS/PDF output
[ ]jp_Shms8KY.blast.gz2015-04-17 19:51 7.9KCompressed PSIBLAST output file
[TXT]jp_Shms8KY.coils.csv2015-04-17 19:51 816 COILS output in CSV format
[ ]jp_Shms8KY.coilseq.lupas_142015-04-17 19:51 5.5KCOILS output, window length 14
[ ]jp_Shms8KY.coilseq.lupas_212015-04-17 19:51 5.5KCOILS output, window length 21
[ ]jp_Shms8KY.coilseq.lupas_282015-04-17 19:51 5.5KCOILS output, window length 28
[ ]jp_Shms8KY.concise2015-04-17 19:51 12KPrediction: coiled-coil, solvent, alignment
[ ]jp_Shms8KY.concise.blc2015-04-17 19:51 5.0KBLC format prediction and alignment data
[ ]jp_Shms8KY.concise.fasta2015-04-17 19:51 4.5KPrediction: coiled-coil, solvent, alignment
[ ]jp_Shms8KY.concise.pdf2015-04-17 19:51 35KPDF prediction and alignment data
[ ]jp_Shms8KY.concise.ps2015-04-17 19:51 603KPrediction: coiled-coil, solvent, alignment
[ ]jp_Shms8KY.fasta2015-04-17 19:48 145 Input query sequence in FASTA format
[ ]jp_Shms8KY.full_MSA.fasta2015-04-17 19:51 6.5KFull MSA before JPred filters in FASTA
[TXT]jp_Shms8KY.full_MSA.fasta.noGaps.html2015-04-17 19:51 11KFull MSA before JPred filters in FASTA
[TXT]jp_Shms8KY.full_MSA.fasta.withGaps.html2015-04-17 19:51 14KFull MSA before JPred filters in FASTA
[ ]jp_Shms8KY.hmm2015-04-17 19:51 25KHHMer2 profile of the alignment
[TXT]jp_Shms8KY.html2015-04-17 19:51 22KHTML prediction and alignment data
[ ]jp_Shms8KY.input2015-04-17 18:08 138 Raw input data for analysis
[ ]jp_Shms8KY.jalview2015-04-17 19:51 3.5KJalview annotation file for alignment
[ ]jp_Shms8KY.jnet2015-04-17 19:51 4.8KJnet secondary structure output
[TXT]jp_Shms8KY.profile2015-04-17 19:50 21KPSIBLAST profile from alignment
[ ]jp_Shms8KY.pssm2015-04-17 19:51 28KPSIBLAST PSSM for Jnet
[TXT]jp_Shms8KY.results.html2016-02-15 12:20 62KJPred results page
[TXT]jp_Shms8KY.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_Shms8KY.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_Shms8KY.seq2015-04-17 18:08 145 Sequence data file
[TXT]jp_Shms8KY.simple.html2015-04-17 19:51 1.3KBrief HTML: sequence and prediction only
[TXT]jp_Shms8KY.svg.html2015-04-17 19:51 54KJalview SVG summary of results
[ ]jp_Shms8KY.tar.gz2015-04-17 19:51 83KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.