JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:33 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2p90a1.name2015-04-17 16:22 0 Job name flag file
[ ]jp_h5_ZgEQ.align2015-04-17 17:32 223KPSIBLAST alignment in FASTA format
[TXT]jp_h5_ZgEQ.als2015-04-17 17:32 4.1KAlscript command file for PS/PDF output
[ ]jp_h5_ZgEQ.blast.gz2015-04-17 17:31 867KCompressed PSIBLAST output file
[TXT]jp_h5_ZgEQ.coils.csv2015-04-17 17:32 1.6KCOILS output in CSV format
[ ]jp_h5_ZgEQ.coilseq.lupas_142015-04-17 17:32 11KCOILS output, window length 14
[ ]jp_h5_ZgEQ.coilseq.lupas_212015-04-17 17:32 11KCOILS output, window length 21
[ ]jp_h5_ZgEQ.coilseq.lupas_282015-04-17 17:32 11KCOILS output, window length 28
[ ]jp_h5_ZgEQ.concise2015-04-17 17:32 443KPrediction: coiled-coil, solvent, alignment
[ ]jp_h5_ZgEQ.concise.blc2015-04-17 17:32 224KBLC format prediction and alignment data
[ ]jp_h5_ZgEQ.concise.fasta2015-04-17 17:32 225KPrediction: coiled-coil, solvent, alignment
[ ]jp_h5_ZgEQ.concise.pdf2015-04-17 17:32 1.5MPDF prediction and alignment data
[ ]jp_h5_ZgEQ.concise.ps2015-04-17 17:32 28MPrediction: coiled-coil, solvent, alignment
[ ]jp_h5_ZgEQ.fasta2015-04-17 16:51 285 Input query sequence in FASTA format
[ ]jp_h5_ZgEQ.full_MSA.fasta2015-04-17 17:31 1.6MFull MSA before JPred filters in FASTA
[TXT]jp_h5_ZgEQ.full_MSA.fasta.noGaps.html2015-04-17 17:32 468KFull MSA before JPred filters in FASTA
[TXT]jp_h5_ZgEQ.full_MSA.fasta.withGaps.html2015-04-17 17:32 6.8MFull MSA before JPred filters in FASTA
[ ]jp_h5_ZgEQ.hmm2015-04-17 17:32 50KHHMer2 profile of the alignment
[TXT]jp_h5_ZgEQ.html2015-04-17 17:32 399KHTML prediction and alignment data
[ ]jp_h5_ZgEQ.input2015-04-17 16:22 276 Raw input data for analysis
[ ]jp_h5_ZgEQ.jalview2015-04-17 17:32 6.3KJalview annotation file for alignment
[ ]jp_h5_ZgEQ.jnet2015-04-17 17:32 9.8KJnet secondary structure output
[TXT]jp_h5_ZgEQ.profile2015-04-17 17:29 43KPSIBLAST profile from alignment
[ ]jp_h5_ZgEQ.pssm2015-04-17 17:32 58KPSIBLAST PSSM for Jnet
[TXT]jp_h5_ZgEQ.results.html2016-02-15 12:20 116KJPred results page
[TXT]jp_h5_ZgEQ.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_h5_ZgEQ.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_h5_ZgEQ.seq2015-04-17 16:22 285 Sequence data file
[TXT]jp_h5_ZgEQ.simple.html2015-04-17 17:32 1.9KBrief HTML: sequence and prediction only
[TXT]jp_h5_ZgEQ.svg.html2015-04-17 17:33 108KJalview SVG summary of results
[ ]jp_h5_ZgEQ.tar.gz2015-04-17 17:33 3.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.