JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:29 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2pbka_.name2015-04-17 16:22 0 Job name flag file
[ ]jp_JBzbIin.align2015-04-17 17:29 11KPSIBLAST alignment in FASTA format
[TXT]jp_JBzbIin.als2015-04-17 17:29 3.3KAlscript command file for PS/PDF output
[ ]jp_JBzbIin.blast.gz2015-04-17 17:29 26KCompressed PSIBLAST output file
[TXT]jp_JBzbIin.coils.csv2015-04-17 17:29 1.4KCOILS output in CSV format
[ ]jp_JBzbIin.coilseq.lupas_142015-04-17 17:29 9.6KCOILS output, window length 14
[ ]jp_JBzbIin.coilseq.lupas_212015-04-17 17:29 9.6KCOILS output, window length 21
[ ]jp_JBzbIin.coilseq.lupas_282015-04-17 17:29 9.6KCOILS output, window length 28
[ ]jp_JBzbIin.concise2015-04-17 17:29 31KPrediction: coiled-coil, solvent, alignment
[ ]jp_JBzbIin.concise.blc2015-04-17 17:29 14KBLC format prediction and alignment data
[ ]jp_JBzbIin.concise.fasta2015-04-17 17:29 13KPrediction: coiled-coil, solvent, alignment
[ ]jp_JBzbIin.concise.pdf2015-04-17 17:29 104KPDF prediction and alignment data
[ ]jp_JBzbIin.concise.ps2015-04-17 17:29 1.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_JBzbIin.fasta2015-04-17 16:51 244 Input query sequence in FASTA format
[ ]jp_JBzbIin.full_MSA.fasta2015-04-17 17:29 31KFull MSA before JPred filters in FASTA
[TXT]jp_JBzbIin.full_MSA.fasta.noGaps.html2015-04-17 17:29 22KFull MSA before JPred filters in FASTA
[TXT]jp_JBzbIin.full_MSA.fasta.withGaps.html2015-04-17 17:29 120KFull MSA before JPred filters in FASTA
[ ]jp_JBzbIin.hmm2015-04-17 17:29 43KHHMer2 profile of the alignment
[TXT]jp_JBzbIin.html2015-04-17 17:29 41KHTML prediction and alignment data
[ ]jp_JBzbIin.input2015-04-17 16:22 235 Raw input data for analysis
[ ]jp_JBzbIin.jalview2015-04-17 17:29 5.4KJalview annotation file for alignment
[ ]jp_JBzbIin.jnet2015-04-17 17:29 8.3KJnet secondary structure output
[TXT]jp_JBzbIin.profile2015-04-17 17:19 37KPSIBLAST profile from alignment
[ ]jp_JBzbIin.pssm2015-04-17 17:29 49KPSIBLAST PSSM for Jnet
[TXT]jp_JBzbIin.results.html2016-02-15 12:20 101KJPred results page
[TXT]jp_JBzbIin.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_JBzbIin.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_JBzbIin.seq2015-04-17 16:22 244 Sequence data file
[TXT]jp_JBzbIin.simple.html2015-04-17 17:29 1.7KBrief HTML: sequence and prediction only
[TXT]jp_JBzbIin.svg.html2015-04-17 17:29 93KJalview SVG summary of results
[ ]jp_JBzbIin.tar.gz2015-04-17 17:29 222KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.