JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:29 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2pwwa1.name2015-04-17 19:24 0 Job name flag file
[ ]jp_6TERMA1.align2015-04-17 22:29 29KPSIBLAST alignment in FASTA format
[TXT]jp_6TERMA1.als2015-04-17 22:29 2.4KAlscript command file for PS/PDF output
[ ]jp_6TERMA1.blast.gz2015-04-17 22:29 69KCompressed PSIBLAST output file
[TXT]jp_6TERMA1.coils.csv2015-04-17 22:29 714 COILS output in CSV format
[ ]jp_6TERMA1.coilseq.lupas_142015-04-17 22:29 4.8KCOILS output, window length 14
[ ]jp_6TERMA1.coilseq.lupas_212015-04-17 22:29 4.8KCOILS output, window length 21
[ ]jp_6TERMA1.coilseq.lupas_282015-04-17 22:29 4.8KCOILS output, window length 28
[ ]jp_6TERMA1.concise2015-04-17 22:29 59KPrediction: coiled-coil, solvent, alignment
[ ]jp_6TERMA1.concise.blc2015-04-17 22:29 30KBLC format prediction and alignment data
[ ]jp_6TERMA1.concise.fasta2015-04-17 22:29 30KPrediction: coiled-coil, solvent, alignment
[ ]jp_6TERMA1.concise.pdf2015-04-17 22:29 194KPDF prediction and alignment data
[ ]jp_6TERMA1.concise.ps2015-04-17 22:29 3.4MPrediction: coiled-coil, solvent, alignment
[ ]jp_6TERMA1.fasta2015-04-17 21:56 128 Input query sequence in FASTA format
[ ]jp_6TERMA1.full_MSA.fasta2015-04-17 22:29 86KFull MSA before JPred filters in FASTA
[TXT]jp_6TERMA1.full_MSA.fasta.noGaps.html2015-04-17 22:29 71KFull MSA before JPred filters in FASTA
[TXT]jp_6TERMA1.full_MSA.fasta.withGaps.html2015-04-17 22:29 357KFull MSA before JPred filters in FASTA
[ ]jp_6TERMA1.hmm2015-04-17 22:29 21KHHMer2 profile of the alignment
[TXT]jp_6TERMA1.html2015-04-17 22:29 82KHTML prediction and alignment data
[ ]jp_6TERMA1.input2015-04-17 19:24 121 Raw input data for analysis
[ ]jp_6TERMA1.jalview2015-04-17 22:29 3.1KJalview annotation file for alignment
[ ]jp_6TERMA1.jnet2015-04-17 22:29 4.2KJnet secondary structure output
[TXT]jp_6TERMA1.profile2015-04-17 22:22 19KPSIBLAST profile from alignment
[ ]jp_6TERMA1.pssm2015-04-17 22:29 24KPSIBLAST PSSM for Jnet
[TXT]jp_6TERMA1.results.html2016-02-15 12:20 55KJPred results page
[TXT]jp_6TERMA1.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_6TERMA1.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_6TERMA1.seq2015-04-17 19:24 128 Sequence data file
[TXT]jp_6TERMA1.simple.html2015-04-17 22:29 1.3KBrief HTML: sequence and prediction only
[TXT]jp_6TERMA1.svg.html2015-04-17 22:29 47KJalview SVG summary of results
[ ]jp_6TERMA1.tar.gz2015-04-17 22:29 378KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.