JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:00 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2q0zx1.name2015-04-17 16:57 0 Job name flag file
[ ]jp_oUVhqQQ.align2015-04-17 17:59 144KPSIBLAST alignment in FASTA format
[TXT]jp_oUVhqQQ.als2015-04-17 17:59 2.6KAlscript command file for PS/PDF output
[ ]jp_oUVhqQQ.blast.gz2015-04-17 17:59 2.4MCompressed PSIBLAST output file
[TXT]jp_oUVhqQQ.coils.csv2015-04-17 17:59 1.1KCOILS output in CSV format
[ ]jp_oUVhqQQ.coilseq.lupas_142015-04-17 17:59 7.4KCOILS output, window length 14
[ ]jp_oUVhqQQ.coilseq.lupas_212015-04-17 17:59 7.4KCOILS output, window length 21
[ ]jp_oUVhqQQ.coilseq.lupas_282015-04-17 17:59 7.4KCOILS output, window length 28
[ ]jp_oUVhqQQ.concise2015-04-17 17:59 284KPrediction: coiled-coil, solvent, alignment
[ ]jp_oUVhqQQ.concise.blc2015-04-17 17:59 144KBLC format prediction and alignment data
[ ]jp_oUVhqQQ.concise.fasta2015-04-17 17:59 146KPrediction: coiled-coil, solvent, alignment
[ ]jp_oUVhqQQ.concise.pdf2015-04-17 18:00 1.0MPDF prediction and alignment data
[ ]jp_oUVhqQQ.concise.ps2015-04-17 17:59 18MPrediction: coiled-coil, solvent, alignment
[ ]jp_oUVhqQQ.fasta2015-04-17 17:56 191 Input query sequence in FASTA format
[ ]jp_oUVhqQQ.full_MSA.fasta2015-04-17 17:59 4.7MFull MSA before JPred filters in FASTA
[TXT]jp_oUVhqQQ.full_MSA.fasta.noGaps.html2015-04-17 18:00 721KFull MSA before JPred filters in FASTA
[TXT]jp_oUVhqQQ.full_MSA.fasta.withGaps.html2015-04-17 18:00 14MFull MSA before JPred filters in FASTA
[ ]jp_oUVhqQQ.hmm2015-04-17 17:59 33KHHMer2 profile of the alignment
[TXT]jp_oUVhqQQ.html2015-04-17 17:59 307KHTML prediction and alignment data
[ ]jp_oUVhqQQ.input2015-04-17 16:57 183 Raw input data for analysis
[ ]jp_oUVhqQQ.jalview2015-04-17 17:59 4.4KJalview annotation file for alignment
[ ]jp_oUVhqQQ.jnet2015-04-17 17:59 6.5KJnet secondary structure output
[TXT]jp_oUVhqQQ.profile2015-04-17 17:58 28KPSIBLAST profile from alignment
[ ]jp_oUVhqQQ.pssm2015-04-17 17:59 38KPSIBLAST PSSM for Jnet
[TXT]jp_oUVhqQQ.results.html2016-02-15 12:20 80KJPred results page
[TXT]jp_oUVhqQQ.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_oUVhqQQ.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_oUVhqQQ.seq2015-04-17 16:57 191 Sequence data file
[TXT]jp_oUVhqQQ.simple.html2015-04-17 17:59 1.4KBrief HTML: sequence and prediction only
[TXT]jp_oUVhqQQ.svg.html2015-04-17 18:00 72KJalview SVG summary of results
[ ]jp_oUVhqQQ.tar.gz2015-04-17 18:00 5.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.