A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 16:00 | 4.7K | JPred server log file |
| README | 2016-02-15 12:20 | 2.1K | Results file descriptions |
| d2q66a3.name | 2015-04-17 15:44 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_cJKeAio.align | 2015-04-17 16:00 | 74K | PSIBLAST alignment in FASTA format |
| jp_cJKeAio.als | 2015-04-17 16:00 | 2.4K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_cJKeAio.blast.gz | 2015-04-17 16:00 | 559K | Compressed PSIBLAST output file |
| jp_cJKeAio.coils.csv | 2015-04-17 16:00 | 1.0K | COILS output in CSV format |
| jp_cJKeAio.coilseq.lupas_14 | 2015-04-17 16:00 | 7.2K | COILS output, window length 14 |
| jp_cJKeAio.coilseq.lupas_21 | 2015-04-17 16:00 | 7.2K | COILS output, window length 21 |
| jp_cJKeAio.coilseq.lupas_28 | 2015-04-17 16:00 | 7.2K | COILS output, window length 28 |
| jp_cJKeAio.concise | 2015-04-17 16:00 | 150K | Prediction: coiled-coil, solvent, alignment |
| jp_cJKeAio.concise.blc | 2015-04-17 16:00 | 76K | BLC format prediction and alignment data |
| jp_cJKeAio.concise.fasta | 2015-04-17 16:00 | 76K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_cJKeAio.concise.pdf | 2015-04-17 16:00 | 489K | PDF prediction and alignment data |
| jp_cJKeAio.concise.ps | 2015-04-17 16:00 | 8.9M | Prediction: coiled-coil, solvent, alignment |
| jp_cJKeAio.fasta | 2015-04-17 15:57 | 187 | Input query sequence in FASTA format |
| jp_cJKeAio.full_MSA.fasta | 2015-04-17 16:00 | 1.1M | Full MSA before JPred filters in FASTA |
| jp_cJKeAio.full_MSA.fasta.noGaps.html | 2015-04-17 16:00 | 213K | Full MSA before JPred filters in FASTA |
| jp_cJKeAio.full_MSA.fasta.withGaps.html | 2015-04-17 16:00 | 3.1M | Full MSA before JPred filters in FASTA |
| jp_cJKeAio.hmm | 2015-04-17 16:00 | 32K | HHMer2 profile of the alignment |
| jp_cJKeAio.html | 2015-04-17 16:00 | 166K | HTML prediction and alignment data |
| jp_cJKeAio.input | 2015-04-17 15:44 | 179 | Raw input data for analysis |
| jp_cJKeAio.jalview | 2015-04-17 16:00 | 4.2K | Jalview annotation file for alignment |
| jp_cJKeAio.jnet | 2015-04-17 16:00 | 6.3K | Jnet secondary structure output |
| jp_cJKeAio.profile | 2015-04-17 15:59 | 28K | PSIBLAST profile from alignment |
| jp_cJKeAio.pssm | 2015-04-17 16:00 | 37K | PSIBLAST PSSM for Jnet |
| jp_cJKeAio.results.html | 2016-02-15 12:20 | 76K | JPred results page |
| jp_cJKeAio.results_jalview.html | 2016-02-24 17:18 | 13K | Jalview results options |
| jp_cJKeAio.results_jalview_app.html | 2016-02-24 17:18 | 16K | HTML prediction and alignment data |
| jp_cJKeAio.seq | 2015-04-17 15:44 | 187 | Sequence data file |
| jp_cJKeAio.simple.html | 2015-04-17 16:00 | 1.4K | Brief HTML: sequence and prediction only |
![[TXT]](jp_cJKeAio.svg.html) | jp_cJKeAio.svg.html | 2015-04-17 16:00 | 68K | Jalview SVG summary of results |
| jp_cJKeAio.tar.gz | 2015-04-17 16:00 | 1.4M | Archive containing complete results |
