JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:58 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2r0xa_.name2015-04-17 17:34 0 Job name flag file
[ ]jp_ITrDLdA.align2015-04-17 18:58 163KPSIBLAST alignment in FASTA format
[TXT]jp_ITrDLdA.als2015-04-17 18:58 2.9KAlscript command file for PS/PDF output
[ ]jp_ITrDLdA.blast.gz2015-04-17 18:56 6.4MCompressed PSIBLAST output file
[TXT]jp_ITrDLdA.coils.csv2015-04-17 18:58 966 COILS output in CSV format
[ ]jp_ITrDLdA.coilseq.lupas_142015-04-17 18:58 6.6KCOILS output, window length 14
[ ]jp_ITrDLdA.coilseq.lupas_212015-04-17 18:58 6.6KCOILS output, window length 21
[ ]jp_ITrDLdA.coilseq.lupas_282015-04-17 18:58 6.6KCOILS output, window length 28
[ ]jp_ITrDLdA.concise2015-04-17 18:58 319KPrediction: coiled-coil, solvent, alignment
[ ]jp_ITrDLdA.concise.blc2015-04-17 18:58 163KBLC format prediction and alignment data
[ ]jp_ITrDLdA.concise.fasta2015-04-17 18:58 165KPrediction: coiled-coil, solvent, alignment
[ ]jp_ITrDLdA.concise.pdf2015-04-17 18:58 1.1MPDF prediction and alignment data
[ ]jp_ITrDLdA.concise.ps2015-04-17 18:58 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_ITrDLdA.fasta2015-04-17 18:50 171 Input query sequence in FASTA format
[ ]jp_ITrDLdA.full_MSA.fasta2015-04-17 18:57 15MFull MSA before JPred filters in FASTA
[TXT]jp_ITrDLdA.full_MSA.fasta.noGaps.html2015-04-17 18:58 2.0MFull MSA before JPred filters in FASTA
[TXT]jp_ITrDLdA.full_MSA.fasta.withGaps.html2015-04-17 18:58 42MFull MSA before JPred filters in FASTA
[ ]jp_ITrDLdA.hmm2015-04-17 18:58 29KHHMer2 profile of the alignment
[TXT]jp_ITrDLdA.html2015-04-17 18:58 359KHTML prediction and alignment data
[ ]jp_ITrDLdA.input2015-04-17 17:34 163 Raw input data for analysis
[ ]jp_ITrDLdA.jalview2015-04-17 18:58 3.9KJalview annotation file for alignment
[ ]jp_ITrDLdA.jnet2015-04-17 18:58 5.7KJnet secondary structure output
[TXT]jp_ITrDLdA.profile2015-04-17 18:55 25KPSIBLAST profile from alignment
[ ]jp_ITrDLdA.pssm2015-04-17 18:58 34KPSIBLAST PSSM for Jnet
[TXT]jp_ITrDLdA.results.html2016-02-15 12:20 72KJPred results page
[TXT]jp_ITrDLdA.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ITrDLdA.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ITrDLdA.seq2015-04-17 17:34 171 Sequence data file
[TXT]jp_ITrDLdA.simple.html2015-04-17 18:58 1.4KBrief HTML: sequence and prediction only
[TXT]jp_ITrDLdA.svg.html2015-04-17 18:58 64KJalview SVG summary of results
[ ]jp_ITrDLdA.tar.gz2015-04-17 18:58 12MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.