JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:17 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2rh2a_.name2015-04-17 18:24 0 Job name flag file
[ ]jp_xwpDCtk.align2015-04-17 20:17 222 PSIBLAST alignment in FASTA format
[TXT]jp_xwpDCtk.als2015-04-17 20:17 1.7KAlscript command file for PS/PDF output
[ ]jp_xwpDCtk.blast.gz2015-04-17 20:17 1.9KCompressed PSIBLAST output file
[TXT]jp_xwpDCtk.coils.csv2015-04-17 20:17 372 COILS output in CSV format
[ ]jp_xwpDCtk.coilseq.lupas_142015-04-17 20:17 2.4KCOILS output, window length 14
[ ]jp_xwpDCtk.coilseq.lupas_212015-04-17 20:17 2.4KCOILS output, window length 21
[ ]jp_xwpDCtk.coilseq.lupas_282015-04-17 20:17 2.4KCOILS output, window length 28
[ ]jp_xwpDCtk.concise2015-04-17 20:17 2.9KPrediction: coiled-coil, solvent, alignment
[ ]jp_xwpDCtk.concise.blc2015-04-17 20:17 1.1KBLC format prediction and alignment data
[ ]jp_xwpDCtk.concise.fasta2015-04-17 20:17 902 Prediction: coiled-coil, solvent, alignment
[ ]jp_xwpDCtk.concise.pdf2015-04-17 20:17 7.6KPDF prediction and alignment data
[ ]jp_xwpDCtk.concise.ps2015-04-17 20:17 110KPrediction: coiled-coil, solvent, alignment
[ ]jp_xwpDCtk.fasta2015-04-17 20:16 70 Input query sequence in FASTA format
[ ]jp_xwpDCtk.full_MSA.fasta2015-04-17 20:17 672 Full MSA before JPred filters in FASTA
[TXT]jp_xwpDCtk.full_MSA.fasta.noGaps.html2015-04-17 20:17 1.8KFull MSA before JPred filters in FASTA
[TXT]jp_xwpDCtk.full_MSA.fasta.withGaps.html2015-04-17 20:17 1.8KFull MSA before JPred filters in FASTA
[ ]jp_xwpDCtk.hmm2015-04-17 20:17 11KHHMer2 profile of the alignment
[TXT]jp_xwpDCtk.html2015-04-17 20:17 6.1KHTML prediction and alignment data
[ ]jp_xwpDCtk.input2015-04-17 18:24 64 Raw input data for analysis
[ ]jp_xwpDCtk.jalview2015-04-17 20:17 1.9KJalview annotation file for alignment
[ ]jp_xwpDCtk.jnet2015-04-17 20:17 2.2KJnet secondary structure output
[TXT]jp_xwpDCtk.profile2015-04-17 20:17 9.5KPSIBLAST profile from alignment
[ ]jp_xwpDCtk.pssm2015-04-17 20:17 12KPSIBLAST PSSM for Jnet
[TXT]jp_xwpDCtk.results.html2016-02-15 12:20 33KJPred results page
[TXT]jp_xwpDCtk.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_xwpDCtk.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_xwpDCtk.seq2015-04-17 18:24 70 Sequence data file
[TXT]jp_xwpDCtk.simple.html2015-04-17 20:17 1.1KBrief HTML: sequence and prediction only
[TXT]jp_xwpDCtk.svg.html2015-04-17 20:17 25KJalview SVG summary of results
[ ]jp_xwpDCtk.tar.gz2015-04-17 20:17 26KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.