JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:59 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2w6ka1.name2015-04-17 17:35 0 Job name flag file
[ ]jp_iVz6vbv.align2015-04-17 18:58 185KPSIBLAST alignment in FASTA format
[TXT]jp_iVz6vbv.als2015-04-17 18:58 3.1KAlscript command file for PS/PDF output
[ ]jp_iVz6vbv.blast.gz2015-04-17 18:57 920KCompressed PSIBLAST output file
[TXT]jp_iVz6vbv.coils.csv2015-04-17 18:58 864 COILS output in CSV format
[ ]jp_iVz6vbv.coilseq.lupas_142015-04-17 18:58 5.8KCOILS output, window length 14
[ ]jp_iVz6vbv.coilseq.lupas_212015-04-17 18:58 5.8KCOILS output, window length 21
[ ]jp_iVz6vbv.coilseq.lupas_282015-04-17 18:58 5.8KCOILS output, window length 28
[ ]jp_iVz6vbv.concise2015-04-17 18:58 360KPrediction: coiled-coil, solvent, alignment
[ ]jp_iVz6vbv.concise.blc2015-04-17 18:58 185KBLC format prediction and alignment data
[ ]jp_iVz6vbv.concise.fasta2015-04-17 18:58 187KPrediction: coiled-coil, solvent, alignment
[ ]jp_iVz6vbv.concise.pdf2015-04-17 18:59 1.2MPDF prediction and alignment data
[ ]jp_iVz6vbv.concise.ps2015-04-17 18:58 22MPrediction: coiled-coil, solvent, alignment
[ ]jp_iVz6vbv.fasta2015-04-17 18:53 153 Input query sequence in FASTA format
[ ]jp_iVz6vbv.full_MSA.fasta2015-04-17 18:57 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_iVz6vbv.full_MSA.fasta.noGaps.html2015-04-17 18:59 418KFull MSA before JPred filters in FASTA
[TXT]jp_iVz6vbv.full_MSA.fasta.withGaps.html2015-04-17 18:59 4.8MFull MSA before JPred filters in FASTA
[ ]jp_iVz6vbv.hmm2015-04-17 18:58 26KHHMer2 profile of the alignment
[TXT]jp_iVz6vbv.html2015-04-17 18:58 429KHTML prediction and alignment data
[ ]jp_iVz6vbv.input2015-04-17 17:35 146 Raw input data for analysis
[ ]jp_iVz6vbv.jalview2015-04-17 18:58 3.6KJalview annotation file for alignment
[ ]jp_iVz6vbv.jnet2015-04-17 18:58 5.1KJnet secondary structure output
[TXT]jp_iVz6vbv.profile2015-04-17 18:56 23KPSIBLAST profile from alignment
[ ]jp_iVz6vbv.pssm2015-04-17 18:58 30KPSIBLAST PSSM for Jnet
[TXT]jp_iVz6vbv.results.html2016-02-15 12:20 67KJPred results page
[TXT]jp_iVz6vbv.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_iVz6vbv.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_iVz6vbv.seq2015-04-17 17:35 153 Sequence data file
[TXT]jp_iVz6vbv.simple.html2015-04-17 18:58 1.4KBrief HTML: sequence and prediction only
[TXT]jp_iVz6vbv.svg.html2015-04-17 18:59 59KJalview SVG summary of results
[ ]jp_iVz6vbv.tar.gz2015-04-17 18:59 2.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.