JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:05 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2wdsa_.name2015-04-17 16:59 0 Job name flag file
[ ]jp_jpFltC3.align2015-04-17 18:04 116KPSIBLAST alignment in FASTA format
[TXT]jp_jpFltC3.als2015-04-17 18:04 2.7KAlscript command file for PS/PDF output
[ ]jp_jpFltC3.blast.gz2015-04-17 18:04 2.4MCompressed PSIBLAST output file
[TXT]jp_jpFltC3.coils.csv2015-04-17 18:04 768 COILS output in CSV format
[ ]jp_jpFltC3.coilseq.lupas_142015-04-17 18:04 5.2KCOILS output, window length 14
[ ]jp_jpFltC3.coilseq.lupas_212015-04-17 18:04 5.2KCOILS output, window length 21
[ ]jp_jpFltC3.coilseq.lupas_282015-04-17 18:04 5.2KCOILS output, window length 28
[ ]jp_jpFltC3.concise2015-04-17 18:04 226KPrediction: coiled-coil, solvent, alignment
[ ]jp_jpFltC3.concise.blc2015-04-17 18:04 116KBLC format prediction and alignment data
[ ]jp_jpFltC3.concise.fasta2015-04-17 18:04 117KPrediction: coiled-coil, solvent, alignment
[ ]jp_jpFltC3.concise.pdf2015-04-17 18:04 793KPDF prediction and alignment data
[ ]jp_jpFltC3.concise.ps2015-04-17 18:04 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_jpFltC3.fasta2015-04-17 17:59 137 Input query sequence in FASTA format
[ ]jp_jpFltC3.full_MSA.fasta2015-04-17 18:04 5.2MFull MSA before JPred filters in FASTA
[TXT]jp_jpFltC3.full_MSA.fasta.noGaps.html2015-04-17 18:04 766KFull MSA before JPred filters in FASTA
[TXT]jp_jpFltC3.full_MSA.fasta.withGaps.html2015-04-17 18:04 13MFull MSA before JPred filters in FASTA
[ ]jp_jpFltC3.hmm2015-04-17 18:04 23KHHMer2 profile of the alignment
[TXT]jp_jpFltC3.html2015-04-17 18:04 289KHTML prediction and alignment data
[ ]jp_jpFltC3.input2015-04-17 16:59 130 Raw input data for analysis
[ ]jp_jpFltC3.jalview2015-04-17 18:04 3.3KJalview annotation file for alignment
[ ]jp_jpFltC3.jnet2015-04-17 18:04 4.6KJnet secondary structure output
[TXT]jp_jpFltC3.profile2015-04-17 18:01 20KPSIBLAST profile from alignment
[ ]jp_jpFltC3.pssm2015-04-17 18:04 26KPSIBLAST PSSM for Jnet
[TXT]jp_jpFltC3.results.html2016-02-15 12:20 60KJPred results page
[TXT]jp_jpFltC3.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_jpFltC3.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_jpFltC3.seq2015-04-17 16:59 137 Sequence data file
[TXT]jp_jpFltC3.simple.html2015-04-17 18:04 1.4KBrief HTML: sequence and prediction only
[TXT]jp_jpFltC3.svg.html2015-04-17 18:05 52KJalview SVG summary of results
[ ]jp_jpFltC3.tar.gz2015-04-17 18:05 4.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.