JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:27 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2wjnl_.name2015-04-17 18:28 0 Job name flag file
[ ]jp_a5XZVaL.align2015-04-17 20:27 43KPSIBLAST alignment in FASTA format
[TXT]jp_a5XZVaL.als2015-04-17 20:27 3.4KAlscript command file for PS/PDF output
[ ]jp_a5XZVaL.blast.gz2015-04-17 20:27 139KCompressed PSIBLAST output file
[TXT]jp_a5XZVaL.coils.csv2015-04-17 20:27 1.6KCOILS output in CSV format
[ ]jp_a5XZVaL.coilseq.lupas_142015-04-17 20:27 11KCOILS output, window length 14
[ ]jp_a5XZVaL.coilseq.lupas_212015-04-17 20:27 11KCOILS output, window length 21
[ ]jp_a5XZVaL.coilseq.lupas_282015-04-17 20:27 11KCOILS output, window length 28
[ ]jp_a5XZVaL.concise2015-04-17 20:27 94KPrediction: coiled-coil, solvent, alignment
[ ]jp_a5XZVaL.concise.blc2015-04-17 20:27 46KBLC format prediction and alignment data
[ ]jp_a5XZVaL.concise.fasta2015-04-17 20:27 45KPrediction: coiled-coil, solvent, alignment
[ ]jp_a5XZVaL.concise.pdf2015-04-17 20:27 282KPDF prediction and alignment data
[ ]jp_a5XZVaL.concise.ps2015-04-17 20:27 5.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_a5XZVaL.fasta2015-04-17 20:21 289 Input query sequence in FASTA format
[ ]jp_a5XZVaL.full_MSA.fasta2015-04-17 20:27 253KFull MSA before JPred filters in FASTA
[TXT]jp_a5XZVaL.full_MSA.fasta.noGaps.html2015-04-17 20:27 246KFull MSA before JPred filters in FASTA
[TXT]jp_a5XZVaL.full_MSA.fasta.withGaps.html2015-04-17 20:27 772KFull MSA before JPred filters in FASTA
[ ]jp_a5XZVaL.hmm2015-04-17 20:27 51KHHMer2 profile of the alignment
[TXT]jp_a5XZVaL.html2015-04-17 20:27 98KHTML prediction and alignment data
[ ]jp_a5XZVaL.input2015-04-17 18:28 280 Raw input data for analysis
[ ]jp_a5XZVaL.jalview2015-04-17 20:27 6.4KJalview annotation file for alignment
[ ]jp_a5XZVaL.jnet2015-04-17 20:27 10KJnet secondary structure output
[TXT]jp_a5XZVaL.profile2015-04-17 20:25 44KPSIBLAST profile from alignment
[ ]jp_a5XZVaL.pssm2015-04-17 20:27 59KPSIBLAST PSSM for Jnet
[TXT]jp_a5XZVaL.results.html2016-02-15 12:20 118KJPred results page
[TXT]jp_a5XZVaL.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_a5XZVaL.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_a5XZVaL.seq2015-04-17 18:28 289 Sequence data file
[TXT]jp_a5XZVaL.simple.html2015-04-17 20:27 1.8KBrief HTML: sequence and prediction only
[TXT]jp_a5XZVaL.svg.html2015-04-17 20:27 109KJalview SVG summary of results
[ ]jp_a5XZVaL.tar.gz2015-04-17 20:27 565KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.