JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:04 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2x5oa1.name2015-04-17 16:59 0 Job name flag file
[ ]jp_jeuy1Ol.align2015-04-17 18:03 105KPSIBLAST alignment in FASTA format
[TXT]jp_jeuy1Ol.als2015-04-17 18:03 2.2KAlscript command file for PS/PDF output
[ ]jp_jeuy1Ol.blast.gz2015-04-17 18:03 1.8MCompressed PSIBLAST output file
[TXT]jp_jeuy1Ol.coils.csv2015-04-17 18:03 588 COILS output in CSV format
[ ]jp_jeuy1Ol.coilseq.lupas_142015-04-17 18:03 3.9KCOILS output, window length 14
[ ]jp_jeuy1Ol.coilseq.lupas_212015-04-17 18:03 3.9KCOILS output, window length 21
[ ]jp_jeuy1Ol.coilseq.lupas_282015-04-17 18:03 3.9KCOILS output, window length 28
[ ]jp_jeuy1Ol.concise2015-04-17 18:03 201KPrediction: coiled-coil, solvent, alignment
[ ]jp_jeuy1Ol.concise.blc2015-04-17 18:03 104KBLC format prediction and alignment data
[ ]jp_jeuy1Ol.concise.fasta2015-04-17 18:03 106KPrediction: coiled-coil, solvent, alignment
[ ]jp_jeuy1Ol.concise.pdf2015-04-17 18:04 711KPDF prediction and alignment data
[ ]jp_jeuy1Ol.concise.ps2015-04-17 18:03 12MPrediction: coiled-coil, solvent, alignment
[ ]jp_jeuy1Ol.fasta2015-04-17 18:00 107 Input query sequence in FASTA format
[ ]jp_jeuy1Ol.full_MSA.fasta2015-04-17 18:03 5.1MFull MSA before JPred filters in FASTA
[TXT]jp_jeuy1Ol.full_MSA.fasta.noGaps.html2015-04-17 18:04 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_jeuy1Ol.full_MSA.fasta.withGaps.html2015-04-17 18:04 17MFull MSA before JPred filters in FASTA
[ ]jp_jeuy1Ol.hmm2015-04-17 18:03 17KHHMer2 profile of the alignment
[TXT]jp_jeuy1Ol.html2015-04-17 18:03 296KHTML prediction and alignment data
[ ]jp_jeuy1Ol.input2015-04-17 16:59 100 Raw input data for analysis
[ ]jp_jeuy1Ol.jalview2015-04-17 18:03 2.7KJalview annotation file for alignment
[ ]jp_jeuy1Ol.jnet2015-04-17 18:03 3.5KJnet secondary structure output
[TXT]jp_jeuy1Ol.profile2015-04-17 18:02 15KPSIBLAST profile from alignment
[ ]jp_jeuy1Ol.pssm2015-04-17 18:03 20KPSIBLAST PSSM for Jnet
[TXT]jp_jeuy1Ol.results.html2016-02-15 12:20 48KJPred results page
[TXT]jp_jeuy1Ol.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_jeuy1Ol.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_jeuy1Ol.seq2015-04-17 16:59 107 Sequence data file
[TXT]jp_jeuy1Ol.simple.html2015-04-17 18:03 1.2KBrief HTML: sequence and prediction only
[TXT]jp_jeuy1Ol.svg.html2015-04-17 18:04 39KJalview SVG summary of results
[ ]jp_jeuy1Ol.tar.gz2015-04-17 18:04 4.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.