JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:48 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3arcl_.name2015-04-17 18:42 0 Job name flag file
[ ]jp_e6u7oWz.align2015-04-17 20:48 320 PSIBLAST alignment in FASTA format
[TXT]jp_e6u7oWz.als2015-04-17 20:48 1.3KAlscript command file for PS/PDF output
[ ]jp_e6u7oWz.blast.gz2015-04-17 20:48 2.1KCompressed PSIBLAST output file
[TXT]jp_e6u7oWz.coils.csv2015-04-17 20:48 252 COILS output in CSV format
[ ]jp_e6u7oWz.coilseq.lupas_142015-04-17 20:48 1.6KCOILS output, window length 14
[ ]jp_e6u7oWz.coilseq.lupas_212015-04-17 20:48 1.6KCOILS output, window length 21
[ ]jp_e6u7oWz.coilseq.lupas_282015-04-17 20:48 1.6KCOILS output, window length 28
[ ]jp_e6u7oWz.concise2015-04-17 20:48 2.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_e6u7oWz.concise.blc2015-04-17 20:48 966 BLC format prediction and alignment data
[ ]jp_e6u7oWz.concise.fasta2015-04-17 20:48 800 Prediction: coiled-coil, solvent, alignment
[ ]jp_e6u7oWz.concise.pdf2015-04-17 20:48 7.3KPDF prediction and alignment data
[ ]jp_e6u7oWz.concise.ps2015-04-17 20:48 92KPrediction: coiled-coil, solvent, alignment
[ ]jp_e6u7oWz.fasta2015-04-17 20:43 50 Input query sequence in FASTA format
[ ]jp_e6u7oWz.full_MSA.fasta2015-04-17 20:48 686 Full MSA before JPred filters in FASTA
[TXT]jp_e6u7oWz.full_MSA.fasta.noGaps.html2015-04-17 20:48 2.1KFull MSA before JPred filters in FASTA
[TXT]jp_e6u7oWz.full_MSA.fasta.withGaps.html2015-04-17 20:48 2.7KFull MSA before JPred filters in FASTA
[ ]jp_e6u7oWz.hmm2015-04-17 20:48 6.9KHHMer2 profile of the alignment
[TXT]jp_e6u7oWz.html2015-04-17 20:48 5.8KHTML prediction and alignment data
[ ]jp_e6u7oWz.input2015-04-17 18:42 44 Raw input data for analysis
[ ]jp_e6u7oWz.jalview2015-04-17 20:48 1.5KJalview annotation file for alignment
[ ]jp_e6u7oWz.jnet2015-04-17 20:48 1.4KJnet secondary structure output
[TXT]jp_e6u7oWz.profile2015-04-17 20:47 6.4KPSIBLAST profile from alignment
[ ]jp_e6u7oWz.pssm2015-04-17 20:48 7.9KPSIBLAST PSSM for Jnet
[TXT]jp_e6u7oWz.results.html2016-02-15 12:20 25KJPred results page
[TXT]jp_e6u7oWz.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_e6u7oWz.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_e6u7oWz.seq2015-04-17 18:42 50 Sequence data file
[TXT]jp_e6u7oWz.simple.html2015-04-17 20:48 955 Brief HTML: sequence and prediction only
[TXT]jp_e6u7oWz.svg.html2015-04-17 20:48 17KJalview SVG summary of results
[ ]jp_e6u7oWz.tar.gz2015-04-17 20:48 23KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.