JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:55 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3bz7a1.name2015-04-17 18:54 0 Job name flag file
[ ]jp_DlGHv3Z.align2015-04-17 21:55 179 PSIBLAST alignment in FASTA format
[TXT]jp_DlGHv3Z.als2015-04-17 21:55 1.6KAlscript command file for PS/PDF output
[ ]jp_DlGHv3Z.blast.gz2015-04-17 21:55 1.9KCompressed PSIBLAST output file
[TXT]jp_DlGHv3Z.coils.csv2015-04-17 21:55 300 COILS output in CSV format
[ ]jp_DlGHv3Z.coilseq.lupas_142015-04-17 21:55 1.9KCOILS output, window length 14
[ ]jp_DlGHv3Z.coilseq.lupas_212015-04-17 21:55 1.9KCOILS output, window length 21
[ ]jp_DlGHv3Z.coilseq.lupas_282015-04-17 21:55 1.9KCOILS output, window length 28
[ ]jp_DlGHv3Z.concise2015-04-17 21:55 2.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_DlGHv3Z.concise.blc2015-04-17 21:55 948 BLC format prediction and alignment data
[ ]jp_DlGHv3Z.concise.fasta2015-04-17 21:55 739 Prediction: coiled-coil, solvent, alignment
[ ]jp_DlGHv3Z.concise.pdf2015-04-17 21:55 6.6KPDF prediction and alignment data
[ ]jp_DlGHv3Z.concise.ps2015-04-17 21:55 89KPrediction: coiled-coil, solvent, alignment
[ ]jp_DlGHv3Z.fasta2015-04-17 21:01 58 Input query sequence in FASTA format
[ ]jp_DlGHv3Z.full_MSA.fasta2015-04-17 21:55 380 Full MSA before JPred filters in FASTA
[TXT]jp_DlGHv3Z.full_MSA.fasta.noGaps.html2015-04-17 21:55 1.1KFull MSA before JPred filters in FASTA
[TXT]jp_DlGHv3Z.full_MSA.fasta.withGaps.html2015-04-17 21:55 1.4KFull MSA before JPred filters in FASTA
[ ]jp_DlGHv3Z.hmm2015-04-17 21:55 8.4KHHMer2 profile of the alignment
[TXT]jp_DlGHv3Z.html2015-04-17 21:55 5.2KHTML prediction and alignment data
[ ]jp_DlGHv3Z.input2015-04-17 18:54 52 Raw input data for analysis
[ ]jp_DlGHv3Z.jalview2015-04-17 21:55 1.7KJalview annotation file for alignment
[ ]jp_DlGHv3Z.jnet2015-04-17 21:55 1.7KJnet secondary structure output
[TXT]jp_DlGHv3Z.profile2015-04-17 21:35 7.6KPSIBLAST profile from alignment
[ ]jp_DlGHv3Z.pssm2015-04-17 21:55 9.7KPSIBLAST PSSM for Jnet
[TXT]jp_DlGHv3Z.results.html2016-02-15 12:20 29KJPred results page
[TXT]jp_DlGHv3Z.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_DlGHv3Z.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_DlGHv3Z.seq2015-04-17 18:54 58 Sequence data file
[TXT]jp_DlGHv3Z.simple.html2015-04-17 21:55 1.0KBrief HTML: sequence and prediction only
[TXT]jp_DlGHv3Z.svg.html2015-04-17 21:55 21KJalview SVG summary of results
[ ]jp_DlGHv3Z.tar.gz2015-04-17 21:55 24KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.