JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:05 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3cr3a1.name2015-04-17 18:13 0 Job name flag file
[ ]jp_JJ9BuV1.align2015-04-17 20:04 216KPSIBLAST alignment in FASTA format
[TXT]jp_JJ9BuV1.als2015-04-17 20:04 2.3KAlscript command file for PS/PDF output
[ ]jp_JJ9BuV1.blast.gz2015-04-17 20:03 3.2MCompressed PSIBLAST output file
[TXT]jp_JJ9BuV1.coils.csv2015-04-17 20:04 1.2KCOILS output in CSV format
[ ]jp_JJ9BuV1.coilseq.lupas_142015-04-17 20:04 8.1KCOILS output, window length 14
[ ]jp_JJ9BuV1.coilseq.lupas_212015-04-17 20:04 8.1KCOILS output, window length 21
[ ]jp_JJ9BuV1.coilseq.lupas_282015-04-17 20:04 8.1KCOILS output, window length 28
[ ]jp_JJ9BuV1.concise2015-04-17 20:04 425KPrediction: coiled-coil, solvent, alignment
[ ]jp_JJ9BuV1.concise.blc2015-04-17 20:04 216KBLC format prediction and alignment data
[ ]jp_JJ9BuV1.concise.fasta2015-04-17 20:04 218KPrediction: coiled-coil, solvent, alignment
[ ]jp_JJ9BuV1.concise.pdf2015-04-17 20:04 1.4MPDF prediction and alignment data
[ ]jp_JJ9BuV1.concise.ps2015-04-17 20:04 27MPrediction: coiled-coil, solvent, alignment
[ ]jp_JJ9BuV1.fasta2015-04-17 19:58 207 Input query sequence in FASTA format
[ ]jp_JJ9BuV1.full_MSA.fasta2015-04-17 20:03 6.5MFull MSA before JPred filters in FASTA
[TXT]jp_JJ9BuV1.full_MSA.fasta.noGaps.html2015-04-17 20:05 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_JJ9BuV1.full_MSA.fasta.withGaps.html2015-04-17 20:05 19MFull MSA before JPred filters in FASTA
[ ]jp_JJ9BuV1.hmm2015-04-17 20:04 36KHHMer2 profile of the alignment
[TXT]jp_JJ9BuV1.html2015-04-17 20:04 437KHTML prediction and alignment data
[ ]jp_JJ9BuV1.input2015-04-17 18:13 199 Raw input data for analysis
[ ]jp_JJ9BuV1.jalview2015-04-17 20:04 4.8KJalview annotation file for alignment
[ ]jp_JJ9BuV1.jnet2015-04-17 20:04 7.0KJnet secondary structure output
[TXT]jp_JJ9BuV1.profile2015-04-17 20:01 31KPSIBLAST profile from alignment
[ ]jp_JJ9BuV1.pssm2015-04-17 20:04 41KPSIBLAST PSSM for Jnet
[TXT]jp_JJ9BuV1.results.html2016-02-15 12:21 83KJPred results page
[TXT]jp_JJ9BuV1.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_JJ9BuV1.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_JJ9BuV1.seq2015-04-17 18:13 207 Sequence data file
[TXT]jp_JJ9BuV1.simple.html2015-04-17 20:04 1.4KBrief HTML: sequence and prediction only
[TXT]jp_JJ9BuV1.svg.html2015-04-17 20:05 75KJalview SVG summary of results
[ ]jp_JJ9BuV1.tar.gz2015-04-17 20:05 7.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.