JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:07 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3dk9a3.name2015-04-17 15:48 0 Job name flag file
[ ]jp_BCcysLa.align2015-04-17 16:06 94KPSIBLAST alignment in FASTA format
[TXT]jp_BCcysLa.als2015-04-17 16:06 2.6KAlscript command file for PS/PDF output
[ ]jp_BCcysLa.blast.gz2015-04-17 16:05 5.2MCompressed PSIBLAST output file
[TXT]jp_BCcysLa.coils.csv2015-04-17 16:06 720 COILS output in CSV format
[ ]jp_BCcysLa.coilseq.lupas_142015-04-17 16:06 4.8KCOILS output, window length 14
[ ]jp_BCcysLa.coilseq.lupas_212015-04-17 16:06 4.8KCOILS output, window length 21
[ ]jp_BCcysLa.coilseq.lupas_282015-04-17 16:06 4.8KCOILS output, window length 28
[ ]jp_BCcysLa.concise2015-04-17 16:06 184KPrediction: coiled-coil, solvent, alignment
[ ]jp_BCcysLa.concise.blc2015-04-17 16:06 94KBLC format prediction and alignment data
[ ]jp_BCcysLa.concise.fasta2015-04-17 16:06 95KPrediction: coiled-coil, solvent, alignment
[ ]jp_BCcysLa.concise.pdf2015-04-17 16:06 646KPDF prediction and alignment data
[ ]jp_BCcysLa.concise.ps2015-04-17 16:06 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_BCcysLa.fasta2015-04-17 16:00 129 Input query sequence in FASTA format
[ ]jp_BCcysLa.full_MSA.fasta2015-04-17 16:06 9.4MFull MSA before JPred filters in FASTA
[TXT]jp_BCcysLa.full_MSA.fasta.noGaps.html2015-04-17 16:06 2.4MFull MSA before JPred filters in FASTA
[TXT]jp_BCcysLa.full_MSA.fasta.withGaps.html2015-04-17 16:06 33MFull MSA before JPred filters in FASTA
[ ]jp_BCcysLa.hmm2015-04-17 16:06 22KHHMer2 profile of the alignment
[TXT]jp_BCcysLa.html2015-04-17 16:06 242KHTML prediction and alignment data
[ ]jp_BCcysLa.input2015-04-17 15:48 122 Raw input data for analysis
[ ]jp_BCcysLa.jalview2015-04-17 16:06 3.1KJalview annotation file for alignment
[ ]jp_BCcysLa.jnet2015-04-17 16:06 4.3KJnet secondary structure output
[TXT]jp_BCcysLa.profile2015-04-17 16:04 19KPSIBLAST profile from alignment
[ ]jp_BCcysLa.pssm2015-04-17 16:06 25KPSIBLAST PSSM for Jnet
[TXT]jp_BCcysLa.results.html2016-02-15 12:21 57KJPred results page
[TXT]jp_BCcysLa.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_BCcysLa.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_BCcysLa.seq2015-04-17 15:48 129 Sequence data file
[TXT]jp_BCcysLa.simple.html2015-04-17 16:06 1.3KBrief HTML: sequence and prediction only
[TXT]jp_BCcysLa.svg.html2015-04-17 16:06 49KJalview SVG summary of results
[ ]jp_BCcysLa.tar.gz2015-04-17 16:07 9.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.