JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:25 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3ft1a_.name2015-04-17 19:04 0 Job name flag file
[ ]jp_Va2JrIS.align2015-04-17 21:24 81KPSIBLAST alignment in FASTA format
[TXT]jp_Va2JrIS.als2015-04-17 21:24 2.4KAlscript command file for PS/PDF output
[ ]jp_Va2JrIS.blast.gz2015-04-17 21:23 386KCompressed PSIBLAST output file
[TXT]jp_Va2JrIS.coils.csv2015-04-17 21:24 630 COILS output in CSV format
[ ]jp_Va2JrIS.coilseq.lupas_142015-04-17 21:24 4.2KCOILS output, window length 14
[ ]jp_Va2JrIS.coilseq.lupas_212015-04-17 21:24 4.2KCOILS output, window length 21
[ ]jp_Va2JrIS.coilseq.lupas_282015-04-17 21:24 4.2KCOILS output, window length 28
[ ]jp_Va2JrIS.concise2015-04-17 21:24 157KPrediction: coiled-coil, solvent, alignment
[ ]jp_Va2JrIS.concise.blc2015-04-17 21:24 81KBLC format prediction and alignment data
[ ]jp_Va2JrIS.concise.fasta2015-04-17 21:24 82KPrediction: coiled-coil, solvent, alignment
[ ]jp_Va2JrIS.concise.pdf2015-04-17 21:25 480KPDF prediction and alignment data
[ ]jp_Va2JrIS.concise.ps2015-04-17 21:24 9.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_Va2JrIS.fasta2015-04-17 21:21 114 Input query sequence in FASTA format
[ ]jp_Va2JrIS.full_MSA.fasta2015-04-17 21:23 732KFull MSA before JPred filters in FASTA
[TXT]jp_Va2JrIS.full_MSA.fasta.noGaps.html2015-04-17 21:25 359KFull MSA before JPred filters in FASTA
[TXT]jp_Va2JrIS.full_MSA.fasta.withGaps.html2015-04-17 21:25 3.5MFull MSA before JPred filters in FASTA
[ ]jp_Va2JrIS.hmm2015-04-17 21:24 19KHHMer2 profile of the alignment
[TXT]jp_Va2JrIS.html2015-04-17 21:24 223KHTML prediction and alignment data
[ ]jp_Va2JrIS.input2015-04-17 19:04 107 Raw input data for analysis
[ ]jp_Va2JrIS.jalview2015-04-17 21:24 2.8KJalview annotation file for alignment
[ ]jp_Va2JrIS.jnet2015-04-17 21:24 3.7KJnet secondary structure output
[TXT]jp_Va2JrIS.profile2015-04-17 21:22 16KPSIBLAST profile from alignment
[ ]jp_Va2JrIS.pssm2015-04-17 21:24 21KPSIBLAST PSSM for Jnet
[TXT]jp_Va2JrIS.results.html2016-02-15 12:21 49KJPred results page
[TXT]jp_Va2JrIS.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_Va2JrIS.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_Va2JrIS.seq2015-04-17 19:04 114 Sequence data file
[TXT]jp_Va2JrIS.simple.html2015-04-17 21:24 1.3KBrief HTML: sequence and prediction only
[TXT]jp_Va2JrIS.svg.html2015-04-17 21:25 41KJalview SVG summary of results
[ ]jp_Va2JrIS.tar.gz2015-04-17 21:25 1.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.