JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:22 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3ilwa_.name2015-04-17 19:29 0 Job name flag file
[ ]jp_uFBasfu.align2015-04-17 22:20 291KPSIBLAST alignment in FASTA format
[TXT]jp_uFBasfu.als2015-04-17 22:20 5.2KAlscript command file for PS/PDF output
[ ]jp_uFBasfu.blast.gz2015-04-17 22:16 14MCompressed PSIBLAST output file
[TXT]jp_uFBasfu.coils.csv2015-04-17 22:20 2.7KCOILS output in CSV format
[ ]jp_uFBasfu.coilseq.lupas_142015-04-17 22:20 19KCOILS output, window length 14
[ ]jp_uFBasfu.coilseq.lupas_212015-04-17 22:20 19KCOILS output, window length 21
[ ]jp_uFBasfu.coilseq.lupas_282015-04-17 22:20 19KCOILS output, window length 28
[ ]jp_uFBasfu.concise2015-04-17 22:20 588KPrediction: coiled-coil, solvent, alignment
[ ]jp_uFBasfu.concise.blc2015-04-17 22:20 294KBLC format prediction and alignment data
[ ]jp_uFBasfu.concise.fasta2015-04-17 22:20 296KPrediction: coiled-coil, solvent, alignment
[ ]jp_uFBasfu.concise.pdf2015-04-17 22:21 2.0MPDF prediction and alignment data
[ ]jp_uFBasfu.concise.ps2015-04-17 22:20 37MPrediction: coiled-coil, solvent, alignment
[ ]jp_uFBasfu.fasta2015-04-17 22:05 483 Input query sequence in FASTA format
[ ]jp_uFBasfu.full_MSA.fasta2015-04-17 22:19 26MFull MSA before JPred filters in FASTA
[TXT]jp_uFBasfu.full_MSA.fasta.noGaps.html2015-04-17 22:21 3.8MFull MSA before JPred filters in FASTA
[TXT]jp_uFBasfu.full_MSA.fasta.withGaps.html2015-04-17 22:21 81MFull MSA before JPred filters in FASTA
[ ]jp_uFBasfu.hmm2015-04-17 22:20 87KHHMer2 profile of the alignment
[TXT]jp_uFBasfu.html2015-04-17 22:20 448KHTML prediction and alignment data
[ ]jp_uFBasfu.input2015-04-17 19:29 471 Raw input data for analysis
[ ]jp_uFBasfu.jalview2015-04-17 22:20 10KJalview annotation file for alignment
[ ]jp_uFBasfu.jnet2015-04-17 22:20 17KJnet secondary structure output
[TXT]jp_uFBasfu.profile2015-04-17 22:14 74KPSIBLAST profile from alignment
[ ]jp_uFBasfu.pssm2015-04-17 22:20 100KPSIBLAST PSSM for Jnet
[TXT]jp_uFBasfu.results.html2016-02-15 12:21 192KJPred results page
[TXT]jp_uFBasfu.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_uFBasfu.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_uFBasfu.seq2015-04-17 19:29 483 Sequence data file
[TXT]jp_uFBasfu.simple.html2015-04-17 22:20 2.4KBrief HTML: sequence and prediction only
[TXT]jp_uFBasfu.svg.html2015-04-17 22:22 184KJalview SVG summary of results
[ ]jp_uFBasfu.tar.gz2015-04-17 22:22 25MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.