JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:44 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3k7pa_.name2015-04-17 19:14 0 Job name flag file
[ ]jp_h5o76C_.align2015-04-17 21:43 139KPSIBLAST alignment in FASTA format
[TXT]jp_h5o76C_.als2015-04-17 21:43 2.9KAlscript command file for PS/PDF output
[ ]jp_h5o76C_.blast.gz2015-04-17 21:43 1.4MCompressed PSIBLAST output file
[TXT]jp_h5o76C_.coils.csv2015-04-17 21:43 948 COILS output in CSV format
[ ]jp_h5o76C_.coilseq.lupas_142015-04-17 21:43 6.4KCOILS output, window length 14
[ ]jp_h5o76C_.coilseq.lupas_212015-04-17 21:43 6.4KCOILS output, window length 21
[ ]jp_h5o76C_.coilseq.lupas_282015-04-17 21:43 6.4KCOILS output, window length 28
[ ]jp_h5o76C_.concise2015-04-17 21:43 272KPrediction: coiled-coil, solvent, alignment
[ ]jp_h5o76C_.concise.blc2015-04-17 21:43 139KBLC format prediction and alignment data
[ ]jp_h5o76C_.concise.fasta2015-04-17 21:43 140KPrediction: coiled-coil, solvent, alignment
[ ]jp_h5o76C_.concise.pdf2015-04-17 21:43 904KPDF prediction and alignment data
[ ]jp_h5o76C_.concise.ps2015-04-17 21:43 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_h5o76C_.fasta2015-04-17 21:40 168 Input query sequence in FASTA format
[ ]jp_h5o76C_.full_MSA.fasta2015-04-17 21:43 1.8MFull MSA before JPred filters in FASTA
[TXT]jp_h5o76C_.full_MSA.fasta.noGaps.html2015-04-17 21:44 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_h5o76C_.full_MSA.fasta.withGaps.html2015-04-17 21:44 9.2MFull MSA before JPred filters in FASTA
[ ]jp_h5o76C_.hmm2015-04-17 21:43 29KHHMer2 profile of the alignment
[TXT]jp_h5o76C_.html2015-04-17 21:43 312KHTML prediction and alignment data
[ ]jp_h5o76C_.input2015-04-17 19:14 160 Raw input data for analysis
[ ]jp_h5o76C_.jalview2015-04-17 21:43 3.9KJalview annotation file for alignment
[ ]jp_h5o76C_.jnet2015-04-17 21:43 5.6KJnet secondary structure output
[TXT]jp_h5o76C_.profile2015-04-17 21:42 25KPSIBLAST profile from alignment
[ ]jp_h5o76C_.pssm2015-04-17 21:43 33KPSIBLAST PSSM for Jnet
[TXT]jp_h5o76C_.results.html2016-02-15 12:21 72KJPred results page
[TXT]jp_h5o76C_.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_h5o76C_.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_h5o76C_.seq2015-04-17 19:14 168 Sequence data file
[TXT]jp_h5o76C_.simple.html2015-04-17 21:43 1.4KBrief HTML: sequence and prediction only
[TXT]jp_h5o76C_.svg.html2015-04-17 21:44 63KJalview SVG summary of results
[ ]jp_h5o76C_.tar.gz2015-04-17 21:44 3.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.