JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:54 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3q20a_.name2015-04-17 18:54 0 Job name flag file
[ ]jp_YECXhoP.align2015-04-17 21:54 17KPSIBLAST alignment in FASTA format
[TXT]jp_YECXhoP.als2015-04-17 21:54 1.9KAlscript command file for PS/PDF output
[ ]jp_YECXhoP.blast.gz2015-04-17 21:54 65KCompressed PSIBLAST output file
[TXT]jp_YECXhoP.coils.csv2015-04-17 21:54 714 COILS output in CSV format
[ ]jp_YECXhoP.coilseq.lupas_142015-04-17 21:54 4.8KCOILS output, window length 14
[ ]jp_YECXhoP.coilseq.lupas_212015-04-17 21:54 4.8KCOILS output, window length 21
[ ]jp_YECXhoP.coilseq.lupas_282015-04-17 21:54 4.8KCOILS output, window length 28
[ ]jp_YECXhoP.concise2015-04-17 21:54 37KPrediction: coiled-coil, solvent, alignment
[ ]jp_YECXhoP.concise.blc2015-04-17 21:54 18KBLC format prediction and alignment data
[ ]jp_YECXhoP.concise.fasta2015-04-17 21:54 18KPrediction: coiled-coil, solvent, alignment
[ ]jp_YECXhoP.concise.pdf2015-04-17 21:54 117KPDF prediction and alignment data
[ ]jp_YECXhoP.concise.ps2015-04-17 21:54 2.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_YECXhoP.fasta2015-04-17 21:01 128 Input query sequence in FASTA format
[ ]jp_YECXhoP.full_MSA.fasta2015-04-17 21:54 144KFull MSA before JPred filters in FASTA
[TXT]jp_YECXhoP.full_MSA.fasta.noGaps.html2015-04-17 21:54 61KFull MSA before JPred filters in FASTA
[TXT]jp_YECXhoP.full_MSA.fasta.withGaps.html2015-04-17 21:54 477KFull MSA before JPred filters in FASTA
[ ]jp_YECXhoP.hmm2015-04-17 21:54 21KHHMer2 profile of the alignment
[TXT]jp_YECXhoP.html2015-04-17 21:54 57KHTML prediction and alignment data
[ ]jp_YECXhoP.input2015-04-17 18:54 121 Raw input data for analysis
[ ]jp_YECXhoP.jalview2015-04-17 21:54 3.2KJalview annotation file for alignment
[ ]jp_YECXhoP.jnet2015-04-17 21:54 4.2KJnet secondary structure output
[TXT]jp_YECXhoP.profile2015-04-17 21:43 19KPSIBLAST profile from alignment
[ ]jp_YECXhoP.pssm2015-04-17 21:54 24KPSIBLAST PSSM for Jnet
[TXT]jp_YECXhoP.results.html2016-02-15 12:21 54KJPred results page
[TXT]jp_YECXhoP.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_YECXhoP.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_YECXhoP.seq2015-04-17 18:54 128 Sequence data file
[TXT]jp_YECXhoP.simple.html2015-04-17 21:54 1.2KBrief HTML: sequence and prediction only
[TXT]jp_YECXhoP.svg.html2015-04-17 21:54 46KJalview SVG summary of results
[ ]jp_YECXhoP.tar.gz2015-04-17 21:54 275KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.