JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:11 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3r72a_.name2015-04-17 19:27 0 Job name flag file
[ ]jp_2EAv4S1.align2015-04-17 22:10 143KPSIBLAST alignment in FASTA format
[TXT]jp_2EAv4S1.als2015-04-17 22:10 2.2KAlscript command file for PS/PDF output
[ ]jp_2EAv4S1.blast.gz2015-04-17 22:09 416KCompressed PSIBLAST output file
[TXT]jp_2EAv4S1.coils.csv2015-04-17 22:10 762 COILS output in CSV format
[ ]jp_2EAv4S1.coilseq.lupas_142015-04-17 22:10 5.1KCOILS output, window length 14
[ ]jp_2EAv4S1.coilseq.lupas_212015-04-17 22:10 5.1KCOILS output, window length 21
[ ]jp_2EAv4S1.coilseq.lupas_282015-04-17 22:10 5.1KCOILS output, window length 28
[ ]jp_2EAv4S1.concise2015-04-17 22:10 278KPrediction: coiled-coil, solvent, alignment
[ ]jp_2EAv4S1.concise.blc2015-04-17 22:10 143KBLC format prediction and alignment data
[ ]jp_2EAv4S1.concise.fasta2015-04-17 22:10 144KPrediction: coiled-coil, solvent, alignment
[ ]jp_2EAv4S1.concise.pdf2015-04-17 22:10 912KPDF prediction and alignment data
[ ]jp_2EAv4S1.concise.ps2015-04-17 22:10 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_2EAv4S1.fasta2015-04-17 22:01 136 Input query sequence in FASTA format
[ ]jp_2EAv4S1.full_MSA.fasta2015-04-17 22:10 835KFull MSA before JPred filters in FASTA
[TXT]jp_2EAv4S1.full_MSA.fasta.noGaps.html2015-04-17 22:10 342KFull MSA before JPred filters in FASTA
[TXT]jp_2EAv4S1.full_MSA.fasta.withGaps.html2015-04-17 22:10 4.4MFull MSA before JPred filters in FASTA
[ ]jp_2EAv4S1.hmm2015-04-17 22:10 23KHHMer2 profile of the alignment
[TXT]jp_2EAv4S1.html2015-04-17 22:10 354KHTML prediction and alignment data
[ ]jp_2EAv4S1.input2015-04-17 19:27 129 Raw input data for analysis
[ ]jp_2EAv4S1.jalview2015-04-17 22:10 3.3KJalview annotation file for alignment
[ ]jp_2EAv4S1.jnet2015-04-17 22:10 4.5KJnet secondary structure output
[TXT]jp_2EAv4S1.profile2015-04-17 22:08 20KPSIBLAST profile from alignment
[ ]jp_2EAv4S1.pssm2015-04-17 22:10 26KPSIBLAST PSSM for Jnet
[TXT]jp_2EAv4S1.results.html2016-02-15 12:21 59KJPred results page
[TXT]jp_2EAv4S1.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_2EAv4S1.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_2EAv4S1.seq2015-04-17 19:27 136 Sequence data file
[TXT]jp_2EAv4S1.simple.html2015-04-17 22:10 1.3KBrief HTML: sequence and prediction only
[TXT]jp_2EAv4S1.svg.html2015-04-17 22:11 51KJalview SVG summary of results
[ ]jp_2EAv4S1.tar.gz2015-04-17 22:11 2.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.