JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:20 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3s4ea_.name2015-04-17 19:32 0 Job name flag file
[ ]jp_hGl0y14.align2015-04-17 22:19 119KPSIBLAST alignment in FASTA format
[TXT]jp_hGl0y14.als2015-04-17 22:19 2.7KAlscript command file for PS/PDF output
[ ]jp_hGl0y14.blast.gz2015-04-17 22:18 7.8MCompressed PSIBLAST output file
[TXT]jp_hGl0y14.coils.csv2015-04-17 22:19 894 COILS output in CSV format
[ ]jp_hGl0y14.coilseq.lupas_142015-04-17 22:19 6.0KCOILS output, window length 14
[ ]jp_hGl0y14.coilseq.lupas_212015-04-17 22:19 6.0KCOILS output, window length 21
[ ]jp_hGl0y14.coilseq.lupas_282015-04-17 22:19 6.0KCOILS output, window length 28
[ ]jp_hGl0y14.concise2015-04-17 22:19 235KPrediction: coiled-coil, solvent, alignment
[ ]jp_hGl0y14.concise.blc2015-04-17 22:19 120KBLC format prediction and alignment data
[ ]jp_hGl0y14.concise.fasta2015-04-17 22:19 121KPrediction: coiled-coil, solvent, alignment
[ ]jp_hGl0y14.concise.pdf2015-04-17 22:19 860KPDF prediction and alignment data
[ ]jp_hGl0y14.concise.ps2015-04-17 22:19 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_hGl0y14.fasta2015-04-17 22:13 159 Input query sequence in FASTA format
[ ]jp_hGl0y14.full_MSA.fasta2015-04-17 22:19 12MFull MSA before JPred filters in FASTA
[TXT]jp_hGl0y14.full_MSA.fasta.noGaps.html2015-04-17 22:20 1.3MFull MSA before JPred filters in FASTA
[TXT]jp_hGl0y14.full_MSA.fasta.withGaps.html2015-04-17 22:20 28MFull MSA before JPred filters in FASTA
[ ]jp_hGl0y14.hmm2015-04-17 22:19 27KHHMer2 profile of the alignment
[TXT]jp_hGl0y14.html2015-04-17 22:19 277KHTML prediction and alignment data
[ ]jp_hGl0y14.input2015-04-17 19:32 151 Raw input data for analysis
[ ]jp_hGl0y14.jalview2015-04-17 22:19 3.7KJalview annotation file for alignment
[ ]jp_hGl0y14.jnet2015-04-17 22:19 5.3KJnet secondary structure output
[TXT]jp_hGl0y14.profile2015-04-17 22:17 23KPSIBLAST profile from alignment
[ ]jp_hGl0y14.pssm2015-04-17 22:19 31KPSIBLAST PSSM for Jnet
[TXT]jp_hGl0y14.results.html2016-02-15 12:21 68KJPred results page
[TXT]jp_hGl0y14.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_hGl0y14.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_hGl0y14.seq2015-04-17 19:32 159 Sequence data file
[TXT]jp_hGl0y14.simple.html2015-04-17 22:19 1.4KBrief HTML: sequence and prediction only
[TXT]jp_hGl0y14.svg.html2015-04-17 22:20 60KJalview SVG summary of results
[ ]jp_hGl0y14.tar.gz2015-04-17 22:20 11MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.