JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:15 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3t2ca_.name2015-04-17 19:31 0 Job name flag file
[ ]jp_M0Pszjf.align2015-04-17 22:15 35KPSIBLAST alignment in FASTA format
[TXT]jp_M0Pszjf.als2015-04-17 22:15 5.3KAlscript command file for PS/PDF output
[ ]jp_M0Pszjf.blast.gz2015-04-17 22:15 103KCompressed PSIBLAST output file
[TXT]jp_M0Pszjf.coils.csv2015-04-17 22:15 2.3KCOILS output in CSV format
[ ]jp_M0Pszjf.coilseq.lupas_142015-04-17 22:15 16KCOILS output, window length 14
[ ]jp_M0Pszjf.coilseq.lupas_212015-04-17 22:15 16KCOILS output, window length 21
[ ]jp_M0Pszjf.coilseq.lupas_282015-04-17 22:15 16KCOILS output, window length 28
[ ]jp_M0Pszjf.concise2015-04-17 22:15 85KPrediction: coiled-coil, solvent, alignment
[ ]jp_M0Pszjf.concise.blc2015-04-17 22:15 40KBLC format prediction and alignment data
[ ]jp_M0Pszjf.concise.fasta2015-04-17 22:15 39KPrediction: coiled-coil, solvent, alignment
[ ]jp_M0Pszjf.concise.pdf2015-04-17 22:15 265KPDF prediction and alignment data
[ ]jp_M0Pszjf.concise.ps2015-04-17 22:15 4.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_M0Pszjf.fasta2015-04-17 22:11 407 Input query sequence in FASTA format
[ ]jp_M0Pszjf.full_MSA.fasta2015-04-17 22:15 112KFull MSA before JPred filters in FASTA
[TXT]jp_M0Pszjf.full_MSA.fasta.noGaps.html2015-04-17 22:15 100KFull MSA before JPred filters in FASTA
[TXT]jp_M0Pszjf.full_MSA.fasta.withGaps.html2015-04-17 22:15 334KFull MSA before JPred filters in FASTA
[ ]jp_M0Pszjf.hmm2015-04-17 22:15 73KHHMer2 profile of the alignment
[TXT]jp_M0Pszjf.html2015-04-17 22:15 88KHTML prediction and alignment data
[ ]jp_M0Pszjf.input2015-04-17 19:31 396 Raw input data for analysis
[ ]jp_M0Pszjf.jalview2015-04-17 22:15 8.6KJalview annotation file for alignment
[ ]jp_M0Pszjf.jnet2015-04-17 22:15 14KJnet secondary structure output
[TXT]jp_M0Pszjf.profile2015-04-17 22:13 62KPSIBLAST profile from alignment
[ ]jp_M0Pszjf.pssm2015-04-17 22:15 84KPSIBLAST PSSM for Jnet
[TXT]jp_M0Pszjf.results.html2016-02-15 12:21 164KJPred results page
[TXT]jp_M0Pszjf.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_M0Pszjf.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_M0Pszjf.seq2015-04-17 19:31 407 Sequence data file
[TXT]jp_M0Pszjf.simple.html2015-04-17 22:15 2.3KBrief HTML: sequence and prediction only
[TXT]jp_M0Pszjf.svg.html2015-04-17 22:15 156KJalview SVG summary of results
[ ]jp_M0Pszjf.tar.gz2015-04-17 22:15 533KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.