JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:20 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3ugja2.name2015-04-17 19:33 0 Job name flag file
[ ]jp_1S7CseW.align2015-04-17 22:20 66KPSIBLAST alignment in FASTA format
[TXT]jp_1S7CseW.als2015-04-17 22:20 1.8KAlscript command file for PS/PDF output
[ ]jp_1S7CseW.blast.gz2015-04-17 22:19 544KCompressed PSIBLAST output file
[TXT]jp_1S7CseW.coils.csv2015-04-17 22:20 438 COILS output in CSV format
[ ]jp_1S7CseW.coilseq.lupas_142015-04-17 22:20 2.9KCOILS output, window length 14
[ ]jp_1S7CseW.coilseq.lupas_212015-04-17 22:20 2.9KCOILS output, window length 21
[ ]jp_1S7CseW.coilseq.lupas_282015-04-17 22:20 2.9KCOILS output, window length 28
[ ]jp_1S7CseW.concise2015-04-17 22:20 126KPrediction: coiled-coil, solvent, alignment
[ ]jp_1S7CseW.concise.blc2015-04-17 22:20 66KBLC format prediction and alignment data
[ ]jp_1S7CseW.concise.fasta2015-04-17 22:20 67KPrediction: coiled-coil, solvent, alignment
[ ]jp_1S7CseW.concise.pdf2015-04-17 22:20 373KPDF prediction and alignment data
[ ]jp_1S7CseW.concise.ps2015-04-17 22:20 6.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_1S7CseW.fasta2015-04-17 22:15 81 Input query sequence in FASTA format
[ ]jp_1S7CseW.full_MSA.fasta2015-04-17 22:19 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_1S7CseW.full_MSA.fasta.noGaps.html2015-04-17 22:20 584KFull MSA before JPred filters in FASTA
[TXT]jp_1S7CseW.full_MSA.fasta.withGaps.html2015-04-17 22:20 4.5MFull MSA before JPred filters in FASTA
[ ]jp_1S7CseW.hmm2015-04-17 22:20 13KHHMer2 profile of the alignment
[TXT]jp_1S7CseW.html2015-04-17 22:20 223KHTML prediction and alignment data
[ ]jp_1S7CseW.input2015-04-17 19:33 75 Raw input data for analysis
[ ]jp_1S7CseW.jalview2015-04-17 22:20 2.2KJalview annotation file for alignment
[ ]jp_1S7CseW.jnet2015-04-17 22:20 2.6KJnet secondary structure output
[TXT]jp_1S7CseW.profile2015-04-17 22:18 11KPSIBLAST profile from alignment
[ ]jp_1S7CseW.pssm2015-04-17 22:20 15KPSIBLAST PSSM for Jnet
[TXT]jp_1S7CseW.results.html2016-02-15 12:21 38KJPred results page
[TXT]jp_1S7CseW.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_1S7CseW.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_1S7CseW.seq2015-04-17 19:33 81 Sequence data file
[TXT]jp_1S7CseW.simple.html2015-04-17 22:20 1.1KBrief HTML: sequence and prediction only
[TXT]jp_1S7CseW.svg.html2015-04-17 22:20 30KJalview SVG summary of results
[ ]jp_1S7CseW.tar.gz2015-04-17 22:20 1.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.