JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:09 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3ui4a_.name2015-04-17 18:56 0 Job name flag file
[ ]jp_X5aBq9P.align2015-04-17 21:08 114KPSIBLAST alignment in FASTA format
[TXT]jp_X5aBq9P.als2015-04-17 21:08 2.1KAlscript command file for PS/PDF output
[ ]jp_X5aBq9P.blast.gz2015-04-17 21:07 4.7MCompressed PSIBLAST output file
[TXT]jp_X5aBq9P.coils.csv2015-04-17 21:08 636 COILS output in CSV format
[ ]jp_X5aBq9P.coilseq.lupas_142015-04-17 21:08 4.2KCOILS output, window length 14
[ ]jp_X5aBq9P.coilseq.lupas_212015-04-17 21:08 4.2KCOILS output, window length 21
[ ]jp_X5aBq9P.coilseq.lupas_282015-04-17 21:08 4.2KCOILS output, window length 28
[ ]jp_X5aBq9P.concise2015-04-17 21:08 219KPrediction: coiled-coil, solvent, alignment
[ ]jp_X5aBq9P.concise.blc2015-04-17 21:08 113KBLC format prediction and alignment data
[ ]jp_X5aBq9P.concise.fasta2015-04-17 21:08 115KPrediction: coiled-coil, solvent, alignment
[ ]jp_X5aBq9P.concise.pdf2015-04-17 21:08 686KPDF prediction and alignment data
[ ]jp_X5aBq9P.concise.ps2015-04-17 21:08 12MPrediction: coiled-coil, solvent, alignment
[ ]jp_X5aBq9P.fasta2015-04-17 21:02 115 Input query sequence in FASTA format
[ ]jp_X5aBq9P.full_MSA.fasta2015-04-17 21:08 9.4MFull MSA before JPred filters in FASTA
[TXT]jp_X5aBq9P.full_MSA.fasta.noGaps.html2015-04-17 21:09 1.7MFull MSA before JPred filters in FASTA
[TXT]jp_X5aBq9P.full_MSA.fasta.withGaps.html2015-04-17 21:09 28MFull MSA before JPred filters in FASTA
[ ]jp_X5aBq9P.hmm2015-04-17 21:08 19KHHMer2 profile of the alignment
[TXT]jp_X5aBq9P.html2015-04-17 21:08 307KHTML prediction and alignment data
[ ]jp_X5aBq9P.input2015-04-17 18:56 108 Raw input data for analysis
[ ]jp_X5aBq9P.jalview2015-04-17 21:08 2.8KJalview annotation file for alignment
[ ]jp_X5aBq9P.jnet2015-04-17 21:08 3.8KJnet secondary structure output
[TXT]jp_X5aBq9P.profile2015-04-17 21:04 16KPSIBLAST profile from alignment
[ ]jp_X5aBq9P.pssm2015-04-17 21:08 22KPSIBLAST PSSM for Jnet
[TXT]jp_X5aBq9P.results.html2016-02-15 12:21 50KJPred results page
[TXT]jp_X5aBq9P.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_X5aBq9P.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_X5aBq9P.seq2015-04-17 18:56 115 Sequence data file
[TXT]jp_X5aBq9P.simple.html2015-04-17 21:08 1.2KBrief HTML: sequence and prediction only
[TXT]jp_X5aBq9P.svg.html2015-04-17 21:09 42KJalview SVG summary of results
[ ]jp_X5aBq9P.tar.gz2015-04-17 21:09 8.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.