JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:25 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3zsja_.name2015-04-17 19:35 0 Job name flag file
[ ]jp_EVH127C.align2015-04-17 22:24 133KPSIBLAST alignment in FASTA format
[TXT]jp_EVH127C.als2015-04-17 22:24 2.8KAlscript command file for PS/PDF output
[ ]jp_EVH127C.blast.gz2015-04-17 22:23 2.1MCompressed PSIBLAST output file
[TXT]jp_EVH127C.coils.csv2015-04-17 22:24 858 COILS output in CSV format
[ ]jp_EVH127C.coilseq.lupas_142015-04-17 22:24 5.8KCOILS output, window length 14
[ ]jp_EVH127C.coilseq.lupas_212015-04-17 22:24 5.8KCOILS output, window length 21
[ ]jp_EVH127C.coilseq.lupas_282015-04-17 22:24 5.8KCOILS output, window length 28
[ ]jp_EVH127C.concise2015-04-17 22:24 260KPrediction: coiled-coil, solvent, alignment
[ ]jp_EVH127C.concise.blc2015-04-17 22:24 133KBLC format prediction and alignment data
[ ]jp_EVH127C.concise.fasta2015-04-17 22:24 135KPrediction: coiled-coil, solvent, alignment
[ ]jp_EVH127C.concise.pdf2015-04-17 22:25 904KPDF prediction and alignment data
[ ]jp_EVH127C.concise.ps2015-04-17 22:24 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_EVH127C.fasta2015-04-17 22:20 152 Input query sequence in FASTA format
[ ]jp_EVH127C.full_MSA.fasta2015-04-17 22:24 4.8MFull MSA before JPred filters in FASTA
[TXT]jp_EVH127C.full_MSA.fasta.noGaps.html2015-04-17 22:25 763KFull MSA before JPred filters in FASTA
[TXT]jp_EVH127C.full_MSA.fasta.withGaps.html2015-04-17 22:25 13MFull MSA before JPred filters in FASTA
[ ]jp_EVH127C.hmm2015-04-17 22:24 26KHHMer2 profile of the alignment
[TXT]jp_EVH127C.html2015-04-17 22:24 310KHTML prediction and alignment data
[ ]jp_EVH127C.input2015-04-17 19:35 145 Raw input data for analysis
[ ]jp_EVH127C.jalview2015-04-17 22:24 3.6KJalview annotation file for alignment
[ ]jp_EVH127C.jnet2015-04-17 22:24 5.1KJnet secondary structure output
[TXT]jp_EVH127C.profile2015-04-17 22:23 22KPSIBLAST profile from alignment
[ ]jp_EVH127C.pssm2015-04-17 22:24 30KPSIBLAST PSSM for Jnet
[TXT]jp_EVH127C.results.html2016-02-15 12:21 64KJPred results page
[TXT]jp_EVH127C.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_EVH127C.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_EVH127C.seq2015-04-17 19:35 152 Sequence data file
[TXT]jp_EVH127C.simple.html2015-04-17 22:24 1.4KBrief HTML: sequence and prediction only
[TXT]jp_EVH127C.svg.html2015-04-17 22:25 56KJalview SVG summary of results
[ ]jp_EVH127C.tar.gz2015-04-17 22:25 4.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.