JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:19 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4af1a2.name2015-04-17 19:32 0 Job name flag file
[ ]jp_n4wQ2Ip.align2015-04-17 22:19 55KPSIBLAST alignment in FASTA format
[TXT]jp_n4wQ2Ip.als2015-04-17 22:19 2.6KAlscript command file for PS/PDF output
[ ]jp_n4wQ2Ip.blast.gz2015-04-17 22:19 229KCompressed PSIBLAST output file
[TXT]jp_n4wQ2Ip.coils.csv2015-04-17 22:19 828 COILS output in CSV format
[ ]jp_n4wQ2Ip.coilseq.lupas_142015-04-17 22:19 5.6KCOILS output, window length 14
[ ]jp_n4wQ2Ip.coilseq.lupas_212015-04-17 22:19 5.6KCOILS output, window length 21
[ ]jp_n4wQ2Ip.coilseq.lupas_282015-04-17 22:19 5.6KCOILS output, window length 28
[ ]jp_n4wQ2Ip.concise2015-04-17 22:19 111KPrediction: coiled-coil, solvent, alignment
[ ]jp_n4wQ2Ip.concise.blc2015-04-17 22:19 56KBLC format prediction and alignment data
[ ]jp_n4wQ2Ip.concise.fasta2015-04-17 22:19 56KPrediction: coiled-coil, solvent, alignment
[ ]jp_n4wQ2Ip.concise.pdf2015-04-17 22:19 354KPDF prediction and alignment data
[ ]jp_n4wQ2Ip.concise.ps2015-04-17 22:19 6.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_n4wQ2Ip.fasta2015-04-17 22:15 147 Input query sequence in FASTA format
[ ]jp_n4wQ2Ip.full_MSA.fasta2015-04-17 22:19 365KFull MSA before JPred filters in FASTA
[TXT]jp_n4wQ2Ip.full_MSA.fasta.noGaps.html2015-04-17 22:19 200KFull MSA before JPred filters in FASTA
[TXT]jp_n4wQ2Ip.full_MSA.fasta.withGaps.html2015-04-17 22:19 1.7MFull MSA before JPred filters in FASTA
[ ]jp_n4wQ2Ip.hmm2015-04-17 22:19 25KHHMer2 profile of the alignment
[TXT]jp_n4wQ2Ip.html2015-04-17 22:19 141KHTML prediction and alignment data
[ ]jp_n4wQ2Ip.input2015-04-17 19:32 140 Raw input data for analysis
[ ]jp_n4wQ2Ip.jalview2015-04-17 22:19 3.5KJalview annotation file for alignment
[ ]jp_n4wQ2Ip.jnet2015-04-17 22:19 4.9KJnet secondary structure output
[TXT]jp_n4wQ2Ip.profile2015-04-17 22:18 22KPSIBLAST profile from alignment
[ ]jp_n4wQ2Ip.pssm2015-04-17 22:19 29KPSIBLAST PSSM for Jnet
[TXT]jp_n4wQ2Ip.results.html2016-02-15 12:21 63KJPred results page
[TXT]jp_n4wQ2Ip.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_n4wQ2Ip.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_n4wQ2Ip.seq2015-04-17 19:32 147 Sequence data file
[TXT]jp_n4wQ2Ip.simple.html2015-04-17 22:19 1.3KBrief HTML: sequence and prediction only
[TXT]jp_n4wQ2Ip.svg.html2015-04-17 22:19 55KJalview SVG summary of results
[ ]jp_n4wQ2Ip.tar.gz2015-04-17 22:19 833KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.