JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:25 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4ay0a2.name2015-04-17 19:37 0 Job name flag file
[ ]jp__oXHMJS.align2015-04-17 22:25 94KPSIBLAST alignment in FASTA format
[TXT]jp__oXHMJS.als2015-04-17 22:25 2.2KAlscript command file for PS/PDF output
[ ]jp__oXHMJS.blast.gz2015-04-17 22:24 712KCompressed PSIBLAST output file
[TXT]jp__oXHMJS.coils.csv2015-04-17 22:25 534 COILS output in CSV format
[ ]jp__oXHMJS.coilseq.lupas_142015-04-17 22:25 3.5KCOILS output, window length 14
[ ]jp__oXHMJS.coilseq.lupas_212015-04-17 22:25 3.5KCOILS output, window length 21
[ ]jp__oXHMJS.coilseq.lupas_282015-04-17 22:25 3.5KCOILS output, window length 28
[ ]jp__oXHMJS.concise2015-04-17 22:25 179KPrediction: coiled-coil, solvent, alignment
[ ]jp__oXHMJS.concise.blc2015-04-17 22:25 93KBLC format prediction and alignment data
[ ]jp__oXHMJS.concise.fasta2015-04-17 22:25 94KPrediction: coiled-coil, solvent, alignment
[ ]jp__oXHMJS.concise.pdf2015-04-17 22:25 594KPDF prediction and alignment data
[ ]jp__oXHMJS.concise.ps2015-04-17 22:25 10MPrediction: coiled-coil, solvent, alignment
[ ]jp__oXHMJS.fasta2015-04-17 22:20 98 Input query sequence in FASTA format
[ ]jp__oXHMJS.full_MSA.fasta2015-04-17 22:24 1.3MFull MSA before JPred filters in FASTA
[TXT]jp__oXHMJS.full_MSA.fasta.noGaps.html2015-04-17 22:25 472KFull MSA before JPred filters in FASTA
[TXT]jp__oXHMJS.full_MSA.fasta.withGaps.html2015-04-17 22:25 5.1MFull MSA before JPred filters in FASTA
[ ]jp__oXHMJS.hmm2015-04-17 22:25 16KHHMer2 profile of the alignment
[TXT]jp__oXHMJS.html2015-04-17 22:25 278KHTML prediction and alignment data
[ ]jp__oXHMJS.input2015-04-17 19:37 91 Raw input data for analysis
[ ]jp__oXHMJS.jalview2015-04-17 22:25 2.5KJalview annotation file for alignment
[ ]jp__oXHMJS.jnet2015-04-17 22:25 3.1KJnet secondary structure output
[TXT]jp__oXHMJS.profile2015-04-17 22:22 14KPSIBLAST profile from alignment
[ ]jp__oXHMJS.pssm2015-04-17 22:25 18KPSIBLAST PSSM for Jnet
[TXT]jp__oXHMJS.results.html2016-02-15 12:21 44KJPred results page
[TXT]jp__oXHMJS.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp__oXHMJS.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp__oXHMJS.seq2015-04-17 19:37 98 Sequence data file
[TXT]jp__oXHMJS.simple.html2015-04-17 22:25 1.2KBrief HTML: sequence and prediction only
[TXT]jp__oXHMJS.svg.html2015-04-17 22:25 36KJalview SVG summary of results
[ ]jp__oXHMJS.tar.gz2015-04-17 22:25 2.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.