JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:15 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4b4ua1.name2015-04-17 17:07 0 Job name flag file
[ ]jp_z42Xp8G.align2015-04-17 18:15 122KPSIBLAST alignment in FASTA format
[TXT]jp_z42Xp8G.als2015-04-17 18:15 2.3KAlscript command file for PS/PDF output
[ ]jp_z42Xp8G.blast.gz2015-04-17 18:14 2.1MCompressed PSIBLAST output file
[TXT]jp_z42Xp8G.coils.csv2015-04-17 18:15 756 COILS output in CSV format
[ ]jp_z42Xp8G.coilseq.lupas_142015-04-17 18:15 5.1KCOILS output, window length 14
[ ]jp_z42Xp8G.coilseq.lupas_212015-04-17 18:15 5.1KCOILS output, window length 21
[ ]jp_z42Xp8G.coilseq.lupas_282015-04-17 18:15 5.1KCOILS output, window length 28
[ ]jp_z42Xp8G.concise2015-04-17 18:15 238KPrediction: coiled-coil, solvent, alignment
[ ]jp_z42Xp8G.concise.blc2015-04-17 18:15 122KBLC format prediction and alignment data
[ ]jp_z42Xp8G.concise.fasta2015-04-17 18:15 124KPrediction: coiled-coil, solvent, alignment
[ ]jp_z42Xp8G.concise.pdf2015-04-17 18:15 843KPDF prediction and alignment data
[ ]jp_z42Xp8G.concise.ps2015-04-17 18:15 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_z42Xp8G.fasta2015-04-17 18:08 135 Input query sequence in FASTA format
[ ]jp_z42Xp8G.full_MSA.fasta2015-04-17 18:15 3.2MFull MSA before JPred filters in FASTA
[TXT]jp_z42Xp8G.full_MSA.fasta.noGaps.html2015-04-17 18:15 1.1MFull MSA before JPred filters in FASTA
[TXT]jp_z42Xp8G.full_MSA.fasta.withGaps.html2015-04-17 18:15 11MFull MSA before JPred filters in FASTA
[ ]jp_z42Xp8G.hmm2015-04-17 18:15 23KHHMer2 profile of the alignment
[TXT]jp_z42Xp8G.html2015-04-17 18:15 306KHTML prediction and alignment data
[ ]jp_z42Xp8G.input2015-04-17 17:07 128 Raw input data for analysis
[ ]jp_z42Xp8G.jalview2015-04-17 18:15 3.3KJalview annotation file for alignment
[ ]jp_z42Xp8G.jnet2015-04-17 18:15 4.5KJnet secondary structure output
[TXT]jp_z42Xp8G.profile2015-04-17 18:13 20KPSIBLAST profile from alignment
[ ]jp_z42Xp8G.pssm2015-04-17 18:15 26KPSIBLAST PSSM for Jnet
[TXT]jp_z42Xp8G.results.html2016-02-15 12:21 58KJPred results page
[TXT]jp_z42Xp8G.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_z42Xp8G.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_z42Xp8G.seq2015-04-17 17:07 135 Sequence data file
[TXT]jp_z42Xp8G.simple.html2015-04-17 18:15 1.3KBrief HTML: sequence and prediction only
[TXT]jp_z42Xp8G.svg.html2015-04-17 18:15 50KJalview SVG summary of results
[ ]jp_z42Xp8G.tar.gz2015-04-17 18:15 4.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.