JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:23 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4eada1.name2015-04-17 19:39 0 Job name flag file
[ ]jp_zMIjiQz.align2015-04-17 22:23 68KPSIBLAST alignment in FASTA format
[TXT]jp_zMIjiQz.als2015-04-17 22:23 1.8KAlscript command file for PS/PDF output
[ ]jp_zMIjiQz.blast.gz2015-04-17 22:22 583KCompressed PSIBLAST output file
[TXT]jp_zMIjiQz.coils.csv2015-04-17 22:23 450 COILS output in CSV format
[ ]jp_zMIjiQz.coilseq.lupas_142015-04-17 22:23 2.9KCOILS output, window length 14
[ ]jp_zMIjiQz.coilseq.lupas_212015-04-17 22:23 2.9KCOILS output, window length 21
[ ]jp_zMIjiQz.coilseq.lupas_282015-04-17 22:23 2.9KCOILS output, window length 28
[ ]jp_zMIjiQz.concise2015-04-17 22:23 130KPrediction: coiled-coil, solvent, alignment
[ ]jp_zMIjiQz.concise.blc2015-04-17 22:23 68KBLC format prediction and alignment data
[ ]jp_zMIjiQz.concise.fasta2015-04-17 22:23 69KPrediction: coiled-coil, solvent, alignment
[ ]jp_zMIjiQz.concise.pdf2015-04-17 22:23 389KPDF prediction and alignment data
[ ]jp_zMIjiQz.concise.ps2015-04-17 22:23 7.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_zMIjiQz.fasta2015-04-17 22:20 83 Input query sequence in FASTA format
[ ]jp_zMIjiQz.full_MSA.fasta2015-04-17 22:22 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_zMIjiQz.full_MSA.fasta.noGaps.html2015-04-17 22:23 830KFull MSA before JPred filters in FASTA
[TXT]jp_zMIjiQz.full_MSA.fasta.withGaps.html2015-04-17 22:23 5.4MFull MSA before JPred filters in FASTA
[ ]jp_zMIjiQz.hmm2015-04-17 22:23 13KHHMer2 profile of the alignment
[TXT]jp_zMIjiQz.html2015-04-17 22:23 226KHTML prediction and alignment data
[ ]jp_zMIjiQz.input2015-04-17 19:39 77 Raw input data for analysis
[ ]jp_zMIjiQz.jalview2015-04-17 22:23 2.3KJalview annotation file for alignment
[ ]jp_zMIjiQz.jnet2015-04-17 22:23 2.6KJnet secondary structure output
[TXT]jp_zMIjiQz.profile2015-04-17 22:22 12KPSIBLAST profile from alignment
[ ]jp_zMIjiQz.pssm2015-04-17 22:23 15KPSIBLAST PSSM for Jnet
[TXT]jp_zMIjiQz.results.html2016-02-15 12:21 38KJPred results page
[TXT]jp_zMIjiQz.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_zMIjiQz.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_zMIjiQz.seq2015-04-17 19:39 83 Sequence data file
[TXT]jp_zMIjiQz.simple.html2015-04-17 22:23 1.1KBrief HTML: sequence and prediction only
[TXT]jp_zMIjiQz.svg.html2015-04-17 22:23 30KJalview SVG summary of results
[ ]jp_zMIjiQz.tar.gz2015-04-17 22:23 1.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.