JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:18 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4f01a2.name2015-04-17 18:20 0 Job name flag file
[ ]jp_IVY7RE0.align2015-04-17 20:18 112KPSIBLAST alignment in FASTA format
[TXT]jp_IVY7RE0.als2015-04-17 20:18 1.6KAlscript command file for PS/PDF output
[ ]jp_IVY7RE0.blast.gz2015-04-17 20:17 1.6MCompressed PSIBLAST output file
[TXT]jp_IVY7RE0.coils.csv2015-04-17 20:18 606 COILS output in CSV format
[ ]jp_IVY7RE0.coilseq.lupas_142015-04-17 20:18 4.0KCOILS output, window length 14
[ ]jp_IVY7RE0.coilseq.lupas_212015-04-17 20:18 4.0KCOILS output, window length 21
[ ]jp_IVY7RE0.coilseq.lupas_282015-04-17 20:18 4.0KCOILS output, window length 28
[ ]jp_IVY7RE0.concise2015-04-17 20:18 216KPrediction: coiled-coil, solvent, alignment
[ ]jp_IVY7RE0.concise.blc2015-04-17 20:18 112KBLC format prediction and alignment data
[ ]jp_IVY7RE0.concise.fasta2015-04-17 20:18 113KPrediction: coiled-coil, solvent, alignment
[ ]jp_IVY7RE0.concise.pdf2015-04-17 20:18 665KPDF prediction and alignment data
[ ]jp_IVY7RE0.concise.ps2015-04-17 20:18 12MPrediction: coiled-coil, solvent, alignment
[ ]jp_IVY7RE0.fasta2015-04-17 20:11 110 Input query sequence in FASTA format
[ ]jp_IVY7RE0.full_MSA.fasta2015-04-17 20:17 2.5MFull MSA before JPred filters in FASTA
[TXT]jp_IVY7RE0.full_MSA.fasta.noGaps.html2015-04-17 20:18 1.1MFull MSA before JPred filters in FASTA
[TXT]jp_IVY7RE0.full_MSA.fasta.withGaps.html2015-04-17 20:18 11MFull MSA before JPred filters in FASTA
[ ]jp_IVY7RE0.hmm2015-04-17 20:18 18KHHMer2 profile of the alignment
[TXT]jp_IVY7RE0.html2015-04-17 20:18 316KHTML prediction and alignment data
[ ]jp_IVY7RE0.input2015-04-17 18:20 103 Raw input data for analysis
[ ]jp_IVY7RE0.jalview2015-04-17 20:18 2.8KJalview annotation file for alignment
[ ]jp_IVY7RE0.jnet2015-04-17 20:18 3.6KJnet secondary structure output
[TXT]jp_IVY7RE0.profile2015-04-17 20:15 16KPSIBLAST profile from alignment
[ ]jp_IVY7RE0.pssm2015-04-17 20:18 21KPSIBLAST PSSM for Jnet
[TXT]jp_IVY7RE0.results.html2016-02-15 12:21 46KJPred results page
[TXT]jp_IVY7RE0.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_IVY7RE0.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_IVY7RE0.seq2015-04-17 18:20 110 Sequence data file
[TXT]jp_IVY7RE0.simple.html2015-04-17 20:18 1.1KBrief HTML: sequence and prediction only
[TXT]jp_IVY7RE0.svg.html2015-04-17 20:18 38KJalview SVG summary of results
[ ]jp_IVY7RE0.tar.gz2015-04-17 20:18 3.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.