JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:28 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4h8ea_.name2015-04-17 19:41 0 Job name flag file
[ ]jp_heKtxrq.align2015-04-17 22:27 198KPSIBLAST alignment in FASTA format
[TXT]jp_heKtxrq.als2015-04-17 22:27 3.4KAlscript command file for PS/PDF output
[ ]jp_heKtxrq.blast.gz2015-04-17 22:26 6.1MCompressed PSIBLAST output file
[TXT]jp_heKtxrq.coils.csv2015-04-17 22:27 1.4KCOILS output in CSV format
[ ]jp_heKtxrq.coilseq.lupas_142015-04-17 22:27 9.9KCOILS output, window length 14
[ ]jp_heKtxrq.coilseq.lupas_212015-04-17 22:27 9.9KCOILS output, window length 21
[ ]jp_heKtxrq.coilseq.lupas_282015-04-17 22:27 9.9KCOILS output, window length 28
[ ]jp_heKtxrq.concise2015-04-17 22:27 392KPrediction: coiled-coil, solvent, alignment
[ ]jp_heKtxrq.concise.blc2015-04-17 22:27 199KBLC format prediction and alignment data
[ ]jp_heKtxrq.concise.fasta2015-04-17 22:27 201KPrediction: coiled-coil, solvent, alignment
[ ]jp_heKtxrq.concise.pdf2015-04-17 22:28 1.3MPDF prediction and alignment data
[ ]jp_heKtxrq.concise.ps2015-04-17 22:27 25MPrediction: coiled-coil, solvent, alignment
[ ]jp_heKtxrq.fasta2015-04-17 22:20 251 Input query sequence in FASTA format
[ ]jp_heKtxrq.full_MSA.fasta2015-04-17 22:27 10MFull MSA before JPred filters in FASTA
[TXT]jp_heKtxrq.full_MSA.fasta.noGaps.html2015-04-17 22:28 1.9MFull MSA before JPred filters in FASTA
[TXT]jp_heKtxrq.full_MSA.fasta.withGaps.html2015-04-17 22:28 33MFull MSA before JPred filters in FASTA
[ ]jp_heKtxrq.hmm2015-04-17 22:27 44KHHMer2 profile of the alignment
[TXT]jp_heKtxrq.html2015-04-17 22:27 372KHTML prediction and alignment data
[ ]jp_heKtxrq.input2015-04-17 19:41 242 Raw input data for analysis
[ ]jp_heKtxrq.jalview2015-04-17 22:27 5.6KJalview annotation file for alignment
[ ]jp_heKtxrq.jnet2015-04-17 22:27 8.6KJnet secondary structure output
[TXT]jp_heKtxrq.profile2015-04-17 22:25 38KPSIBLAST profile from alignment
[ ]jp_heKtxrq.pssm2015-04-17 22:27 50KPSIBLAST PSSM for Jnet
[TXT]jp_heKtxrq.results.html2016-02-15 12:21 103KJPred results page
[TXT]jp_heKtxrq.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_heKtxrq.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_heKtxrq.seq2015-04-17 19:41 251 Sequence data file
[TXT]jp_heKtxrq.simple.html2015-04-17 22:27 1.7KBrief HTML: sequence and prediction only
[TXT]jp_heKtxrq.svg.html2015-04-17 22:28 95KJalview SVG summary of results
[ ]jp_heKtxrq.tar.gz2015-04-17 22:28 11MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.