JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:29 4.9KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4hs1a_.name2015-04-17 19:47 0 Job name flag file
[ ]jp_uBVoR7E.align2015-04-17 22:29 98KPSIBLAST alignment in FASTA format
[TXT]jp_uBVoR7E.als2015-04-17 22:29 2.2KAlscript command file for PS/PDF output
[ ]jp_uBVoR7E.blast.gz2015-04-17 22:28 2.3MCompressed PSIBLAST output file
[TXT]jp_uBVoR7E.coils.csv2015-04-17 22:29 534 COILS output in CSV format
[ ]jp_uBVoR7E.coilseq.lupas_142015-04-17 22:29 3.5KCOILS output, window length 14
[ ]jp_uBVoR7E.coilseq.lupas_212015-04-17 22:29 3.5KCOILS output, window length 21
[ ]jp_uBVoR7E.coilseq.lupas_282015-04-17 22:29 3.5KCOILS output, window length 28
[ ]jp_uBVoR7E.concise2015-04-17 22:29 186KPrediction: coiled-coil, solvent, alignment
[ ]jp_uBVoR7E.concise.blc2015-04-17 22:29 97KBLC format prediction and alignment data
[ ]jp_uBVoR7E.concise.fasta2015-04-17 22:29 99KPrediction: coiled-coil, solvent, alignment
[ ]jp_uBVoR7E.concise.pdf2015-04-17 22:29 2.2KPDF prediction and alignment data
[ ]jp_uBVoR7E.concise.ps2015-04-17 22:29 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_uBVoR7E.fasta2015-04-17 22:22 98 Input query sequence in FASTA format
[ ]jp_uBVoR7E.full_MSA.fasta2015-04-17 22:28 7.1MFull MSA before JPred filters in FASTA
[TXT]jp_uBVoR7E.full_MSA.fasta.noGaps.html2015-04-17 22:29 1.7MFull MSA before JPred filters in FASTA
[TXT]jp_uBVoR7E.full_MSA.fasta.withGaps.html2015-04-17 22:29 22MFull MSA before JPred filters in FASTA
[ ]jp_uBVoR7E.hmm2015-04-17 22:29 16KHHMer2 profile of the alignment
[TXT]jp_uBVoR7E.html2015-04-17 22:29 290KHTML prediction and alignment data
[ ]jp_uBVoR7E.input2015-04-17 19:47 91 Raw input data for analysis
[ ]jp_uBVoR7E.jalview2015-04-17 22:29 2.5KJalview annotation file for alignment
[ ]jp_uBVoR7E.jnet2015-04-17 22:29 3.1KJnet secondary structure output
[TXT]jp_uBVoR7E.profile2015-04-17 22:26 14KPSIBLAST profile from alignment
[ ]jp_uBVoR7E.pssm2015-04-17 22:29 18KPSIBLAST PSSM for Jnet
[TXT]jp_uBVoR7E.results.html2016-02-15 12:21 45KJPred results page
[TXT]jp_uBVoR7E.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_uBVoR7E.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_uBVoR7E.seq2015-04-17 19:47 98 Sequence data file
[TXT]jp_uBVoR7E.simple.html2015-04-17 22:29 1.2KBrief HTML: sequence and prediction only
[TXT]jp_uBVoR7E.svg.html2015-04-17 22:29 36KJalview SVG summary of results
[ ]jp_uBVoR7E.tar.gz2015-04-17 22:29 4.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.