JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-21 10:44 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]e1gk9_________1A.name2015-04-21 10:39 0 Job name flag file
[ ]jp_vYK65pb.align2015-04-21 10:44 179KPSIBLAST alignment in FASTA format
[TXT]jp_vYK65pb.als2015-04-21 10:44 3.0KAlscript command file for PS/PDF output
[ ]jp_vYK65pb.blast.gz2015-04-21 10:43 1.7MCompressed PSIBLAST output file
[TXT]jp_vYK65pb.coils.csv2015-04-21 10:44 1.2KCOILS output in CSV format
[ ]jp_vYK65pb.coilseq.lupas_142015-04-21 10:44 8.7KCOILS output, window length 14
[ ]jp_vYK65pb.coilseq.lupas_212015-04-21 10:44 8.7KCOILS output, window length 21
[ ]jp_vYK65pb.coilseq.lupas_282015-04-21 10:44 8.7KCOILS output, window length 28
[ ]jp_vYK65pb.concise2015-04-21 10:44 354KPrediction: coiled-coil, solvent, alignment
[ ]jp_vYK65pb.concise.blc2015-04-21 10:44 180KBLC format prediction and alignment data
[ ]jp_vYK65pb.concise.fasta2015-04-21 10:44 181KPrediction: coiled-coil, solvent, alignment
[ ]jp_vYK65pb.concise.pdf2015-04-21 10:44 1.1MPDF prediction and alignment data
[ ]jp_vYK65pb.concise.ps2015-04-21 10:44 21MPrediction: coiled-coil, solvent, alignment
[ ]jp_vYK65pb.fasta2015-04-21 10:39 223 Input query sequence in FASTA format
[ ]jp_vYK65pb.full_MSA.fasta2015-04-21 10:43 2.6MFull MSA before JPred filters in FASTA
[TXT]jp_vYK65pb.full_MSA.fasta.noGaps.html2015-04-21 10:44 685KFull MSA before JPred filters in FASTA
[TXT]jp_vYK65pb.full_MSA.fasta.withGaps.html2015-04-21 10:44 10MFull MSA before JPred filters in FASTA
[ ]jp_vYK65pb.hmm2015-04-21 10:44 39KHHMer2 profile of the alignment
[TXT]jp_vYK65pb.html2015-04-21 10:44 353KHTML prediction and alignment data
[ ]jp_vYK65pb.input2015-04-21 10:39 215 Raw input data for analysis
[ ]jp_vYK65pb.jalview2015-04-21 10:44 5.0KJalview annotation file for alignment
[ ]jp_vYK65pb.jnet2015-04-21 10:44 7.6KJnet secondary structure output
[TXT]jp_vYK65pb.profile2015-04-21 10:42 33KPSIBLAST profile from alignment
[ ]jp_vYK65pb.pssm2015-04-21 10:44 45KPSIBLAST PSSM for Jnet
[TXT]jp_vYK65pb.results.html2016-02-15 12:21 92KJPred results page
[TXT]jp_vYK65pb.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_vYK65pb.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_vYK65pb.seq2015-04-21 10:39 223 Sequence data file
[TXT]jp_vYK65pb.simple.html2015-04-21 10:44 1.5KBrief HTML: sequence and prediction only
[TXT]jp_vYK65pb.svg.html2015-04-21 10:44 84KJalview SVG summary of results
[ ]jp_vYK65pb.tar.gz2015-04-21 10:44 4.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.