Publications 1993


		Publications: 1993

			Livingstone, C. D. and Barton, G. J. (1993), "Protein Sequence Alignments: A Strategy for the Hierarchical Analysis of Residue Conservation", Comp. Appl. Bio. Sci., 9, 745-756. This paper describes the program AMAS. For instructions on how to obtain AMAS, please see the software distribution server. A gzip compressed PostScript version of this paper is available here. Russell, R. B. and Barton, G. J. (1993), "An SH2-SH3 Domain hybrid", Nature,364, 765. The STAMP software used to make this discovery is available - see our software distribution server Russell, R. B. and Barton, G. J. (1993), "The Limits of Protein Secondary Structure Prediction Accuracy from Multiple Sequence Alignment", J. Mol. Biol.,234, 951-957. The ASSP software mentioned in this paper is available from our software distribution server Barton, G. J. (1993b), "An Efficient Algorithm to Locate All Locally Optimal Alignments Between Two Sequences Allowing for Gaps", Comp. Appl. Bio. Sci.,9, 729-734. C code that implements this algorithm is available by email from Geoff. Barton. A gzip compressed PostScript version of this paper is available here. Boscott, P. E., Barton, G. J. and Richards, W. G. (1993), "Secondary Structure Prediction for Modelling by Homology", Prot. Eng.,6, 261-266. This paper describes a method for combining secondary structure prediction techniques. The paper also compares the results of ab inito prediction, with prediction from alignment. Barton, G. J. and Russell, R. B. (1993), "Protein Structure Prediction", Nature, 361, 505-506. A comment on the SH3 secondary structure prediction by S. Benner and colleagues Barton, G. J. (1993a), "ALSCRIPT - A Tool to Format Multiple Sequence Alignments", Prot. Eng., 6, .37-40. Alscript is available from our software distribution server A gzip compressed PostScript version of this paper is available here.