JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:22 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1a9xa1.name2015-04-17 15:17 0 Job name flag file
[ ]jp_J2MhWWN.align2015-04-17 15:21 133KPSIBLAST alignment in FASTA format
[TXT]jp_J2MhWWN.als2015-04-17 15:21 2.5KAlscript command file for PS/PDF output
[ ]jp_J2MhWWN.blast.gz2015-04-17 15:21 3.5MCompressed PSIBLAST output file
[TXT]jp_J2MhWWN.coils.csv2015-04-17 15:21 948 COILS output in CSV format
[ ]jp_J2MhWWN.coilseq.lupas_142015-04-17 15:21 6.4KCOILS output, window length 14
[ ]jp_J2MhWWN.coilseq.lupas_212015-04-17 15:21 6.4KCOILS output, window length 21
[ ]jp_J2MhWWN.coilseq.lupas_282015-04-17 15:21 6.4KCOILS output, window length 28
[ ]jp_J2MhWWN.concise2015-04-17 15:21 261KPrediction: coiled-coil, solvent, alignment
[ ]jp_J2MhWWN.concise.blc2015-04-17 15:21 133KBLC format prediction and alignment data
[ ]jp_J2MhWWN.concise.fasta2015-04-17 15:21 135KPrediction: coiled-coil, solvent, alignment
[ ]jp_J2MhWWN.concise.pdf2015-04-17 15:22 890KPDF prediction and alignment data
[ ]jp_J2MhWWN.concise.ps2015-04-17 15:21 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_J2MhWWN.fasta2015-04-17 15:17 168 Input query sequence in FASTA format
[ ]jp_J2MhWWN.full_MSA.fasta2015-04-17 15:21 5.7MFull MSA before JPred filters in FASTA
[TXT]jp_J2MhWWN.full_MSA.fasta.noGaps.html2015-04-17 15:22 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_J2MhWWN.full_MSA.fasta.withGaps.html2015-04-17 15:22 17MFull MSA before JPred filters in FASTA
[ ]jp_J2MhWWN.hmm2015-04-17 15:21 29KHHMer2 profile of the alignment
[TXT]jp_J2MhWWN.html2015-04-17 15:21 298KHTML prediction and alignment data
[ ]jp_J2MhWWN.input2015-04-17 15:17 160 Raw input data for analysis
[ ]jp_J2MhWWN.jalview2015-04-17 15:21 3.9KJalview annotation file for alignment
[ ]jp_J2MhWWN.jnet2015-04-17 15:21 5.6KJnet secondary structure output
[TXT]jp_J2MhWWN.profile2015-04-17 15:20 25KPSIBLAST profile from alignment
[ ]jp_J2MhWWN.pssm2015-04-17 15:21 33KPSIBLAST PSSM for Jnet
[TXT]jp_J2MhWWN.results.html2016-02-15 12:16 71KJPred results page
[TXT]jp_J2MhWWN.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_J2MhWWN.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_J2MhWWN.seq2015-04-17 15:17 168 Sequence data file
[TXT]jp_J2MhWWN.simple.html2015-04-17 15:21 1.4KBrief HTML: sequence and prediction only
[TXT]jp_J2MhWWN.svg.html2015-04-17 15:22 63KJalview SVG summary of results
[ ]jp_J2MhWWN.tar.gz2015-04-17 15:22 6.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.