JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 14:56 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1a9xb1.name2015-04-17 14:51 0 Job name flag file
[ ]jp_i7Sqlkr.align2015-04-17 14:56 116KPSIBLAST alignment in FASTA format
[TXT]jp_i7Sqlkr.als2015-04-17 14:56 3.0KAlscript command file for PS/PDF output
[ ]jp_i7Sqlkr.blast.gz2015-04-17 14:55 2.3MCompressed PSIBLAST output file
[TXT]jp_i7Sqlkr.coils.csv2015-04-17 14:56 936 COILS output in CSV format
[ ]jp_i7Sqlkr.coilseq.lupas_142015-04-17 14:56 6.3KCOILS output, window length 14
[ ]jp_i7Sqlkr.coilseq.lupas_212015-04-17 14:56 6.3KCOILS output, window length 21
[ ]jp_i7Sqlkr.coilseq.lupas_282015-04-17 14:56 6.3KCOILS output, window length 28
[ ]jp_i7Sqlkr.concise2015-04-17 14:56 228KPrediction: coiled-coil, solvent, alignment
[ ]jp_i7Sqlkr.concise.blc2015-04-17 14:56 116KBLC format prediction and alignment data
[ ]jp_i7Sqlkr.concise.fasta2015-04-17 14:56 118KPrediction: coiled-coil, solvent, alignment
[ ]jp_i7Sqlkr.concise.pdf2015-04-17 14:56 725KPDF prediction and alignment data
[ ]jp_i7Sqlkr.concise.ps2015-04-17 14:56 13MPrediction: coiled-coil, solvent, alignment
[ ]jp_i7Sqlkr.fasta2015-04-17 14:51 166 Input query sequence in FASTA format
[ ]jp_i7Sqlkr.full_MSA.fasta2015-04-17 14:55 3.9MFull MSA before JPred filters in FASTA
[TXT]jp_i7Sqlkr.full_MSA.fasta.noGaps.html2015-04-17 14:56 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_i7Sqlkr.full_MSA.fasta.withGaps.html2015-04-17 14:56 14MFull MSA before JPred filters in FASTA
[ ]jp_i7Sqlkr.hmm2015-04-17 14:56 28KHHMer2 profile of the alignment
[TXT]jp_i7Sqlkr.html2015-04-17 14:56 263KHTML prediction and alignment data
[ ]jp_i7Sqlkr.input2015-04-17 14:51 158 Raw input data for analysis
[ ]jp_i7Sqlkr.jalview2015-04-17 14:56 3.8KJalview annotation file for alignment
[ ]jp_i7Sqlkr.jnet2015-04-17 14:56 5.6KJnet secondary structure output
[TXT]jp_i7Sqlkr.profile2015-04-17 14:54 24KPSIBLAST profile from alignment
[ ]jp_i7Sqlkr.pssm2015-04-17 14:56 32KPSIBLAST PSSM for Jnet
[TXT]jp_i7Sqlkr.results.html2016-02-15 12:16 70KJPred results page
[TXT]jp_i7Sqlkr.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_i7Sqlkr.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_i7Sqlkr.seq2015-04-17 14:51 166 Sequence data file
[TXT]jp_i7Sqlkr.simple.html2015-04-17 14:56 1.5KBrief HTML: sequence and prediction only
[TXT]jp_i7Sqlkr.svg.html2015-04-17 14:56 62KJalview SVG summary of results
[ ]jp_i7Sqlkr.tar.gz2015-04-17 14:56 4.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.